DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru2 and Celf4

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_038952808.1 Gene:Celf4 / 307540 RGDID:1307630 Length:583 Species:Rattus norvegicus


Alignment Length:669 Identity:210/669 - (31%)
Similarity:274/669 - (40%) Gaps:238/669 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 ATAAAAAAAAPSTQLNSSINSRTSLGDQGGAIVVVTPAPPVAAPPTGGPNRNQSPTRDCSVKMEL 277
            ||.|...|...|...|...:|..|.|...|.                    :.||....::.|: 
  Rat     6 ATLANGQADNASLSTNGLGSSPGSAGHMNGL--------------------SHSPGNPSTIPMK- 49

  Fly   278 MESTSPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVT 342
                         |.|.||:|:||||:..||..|:.:||:||.::.|.||:|:.|.:.:||.|:|
  Rat    50 -------------DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 101

  Fly   343 YYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENR-----------NERKLFVGMLNKKYTEA 396
            |..|::||:||.|||..|||.||:.|||:||||||:|           .:||||||||||:.:|.
  Rat   102 YCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSED 166

  Fly   397 DVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFAD 461
            |||:||...|.|||||:||...|.|||||||.:::...|..||.|||.||||.|.|:.|||||||
  Rat   167 DVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 231

  Fly   462 TQKEKDQKKMQQIHAFCGINTPS----GATAGAATPTINAATALIAAPPSAGRTNPSMAAALAAV 522
            |.||:..::|||:....|:..|.    ||....|...:....||:|:....|..|| |||..|| 
  Rat   232 TDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNP-MAAFAAA- 294

  Fly   523 PQVQQAGSAATAPTTLVPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQ 587
             |:||          :..||.....:|.:||.                                 
  Rat   295 -QMQQ----------MAALNMNGLAAAPMTPT--------------------------------- 315

  Fly   588 LHGYGLSPAHYLPGLNFHHPPENSAHHSQHSPGIGGASAASLSAAAATAASNPLGGAPPPTPTPT 652
                                                                 .||:.||     
  Rat   316 -----------------------------------------------------SGGSTPP----- 322

  Fly   653 SSAGHAAGAGLLAAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSATSGLHNQRLTYA 717
                   |....|.||:                                                
  Rat   323 -------GITAPAVPSI------------------------------------------------ 332

  Fly   718 AAPPPPPISTTYNMPQLIGHTATPTQPGG--SSQSLTFNALWP-----PNAADPYSSSLSGLTN- 774
                |.||...       |.|..|.|..|  :::::..|.:.|     |.||||...:.:|:.. 
  Rat   333 ----PSPIGVN-------GFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY 386

  Fly   775 ------GAAYGAASQPVTTSALQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGN 833
                  .||||..||     |.......:..:|.|||:|.||.||||||||.|.:|...||||||
  Rat   387 AGPAAYPAAYGQISQ-----AFPQPPPMIPQQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGN 446

  Fly   834 VLSAKVFIDKQTNLSKCFG 852
            |:|:|||:|:.||.|||||
  Rat   447 VISSKVFVDRATNQSKCFG 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 42/80 (53%)
RRM2_Bruno_like 381..461 CDD:241080 49/79 (62%)
RRM_SF 801..892 CDD:302621 36/52 (69%)
Celf4XP_038952808.1 RRM1_CELF3_4_5_6 49..135 CDD:410041 45/99 (45%)
PABP-1234 <56..378 CDD:130689 149/491 (30%)
RRM2_CELF3_4_5_6 151..231 CDD:410043 49/79 (62%)
RRM_SF 417..>465 CDD:418427 32/47 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340076
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100683
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X208
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.650

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