DRSC/TRiP Functional Genomics Resources

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Protein Alignment bru2 and celf2

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_012813883.1 Gene:celf2 / 100125022 XenbaseID:XB-GENE-963640 Length:559 Species:Xenopus tropicalis


Alignment Length:644 Identity:263/644 - (40%)
Similarity:336/644 - (52%) Gaps:184/644 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 DQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTS--ISRGCCFVTYYTRKAAL 350
            ||||.|.|||||||||::|.|..|:.:||.:|.|:.:|||||:..:  .|:||||||:|||||||
 Frog    62 DQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAAL 126

  Fly   351 RAQDALHNIKTLDGMHHPIQMKPADSENRN---ERKLFVGMLNKKYTEADVRQLFTGHGTIEECT 412
            .||:||||||||.||||||||||||||..|   :||||:||::||..|.|:|.:|:..|.||||.
 Frog   127 EAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECR 191

  Fly   413 VLRDQAGQSKG----CAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQ 473
            :||...|.|:.    ||||||:|:..|..||||:||||||||||:|:|||||||||:|:|:::||
 Frog   192 ILRGPDGLSRASQHCCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQ 256

  Fly   474 IHAFCGINTPSGATAGAATPTINAATALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATAPTTL 538
                                                          ....|:||..:|.      
 Frog   257 ----------------------------------------------QLAQQMQQLNTAT------ 269

  Fly   539 VPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYGLSPAHYLPGLN 603
              ..:.|.|.| |||..||.    ...|.:::.|||                  .|....:.|:|
 Frog   270 --WGNLTGLGA-LTPQYLAL----LQQATSSSNLGA------------------FSGIQQMAGMN 309

  Fly   604 FHHPPENSAHHSQHSPGIGGASAASLSAAAATAASNPLG------GAPPPTPTPTSSAGHAAGAG 662
                    |...|:...:..|:||:.::|..|.| |||.      || ..:|...|:|..:|||.
 Frog   310 --------ALQLQNLATLAAAAAAAQTSATTTNA-NPLSTTTSALGA-LTSPVAASTANSSAGAA 364

  Fly   663 LLAAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSATSGLHNQRLTYAAAPPPPPIST 727
            :                           :|.:|.|...|.:.||.||:|..          .::.
 Frog   365 M---------------------------NSLTSLGTLQGLAGATVGLNNIN----------ALAG 392

  Fly   728 TYNMPQLIGHTATPTQPGGSSQSLTFNALWPPNAADPYSSSLSGLTNGAA--------------- 777
            |.|:.|::...|...  ||                    ...:|||||.|               
 Frog   393 TVNIAQMLSGMAALN--GG--------------------LGATGLTNGTAGTMDALTQAYSGIQQ 435

  Fly   778 YGAASQPV--TTSALQAAAAGVTGKQ------IEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNV 834
            |.||:.|.  :.|.||..:|..:.|:      .:||:|:|||||||||||.|.|:...|:|||||
 Frog   436 YAAAALPTLYSQSLLQQQSAAGSQKEGLLFISSQGPEGANLFIYHLPQEFGDQDILQMFMPFGNV 500

  Fly   835 LSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSKDAAKPY 893
            :||||||||||||||||||||||||.||.||||||:|||||.|||||||||||:.:|||
 Frog   501 ISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 55/82 (67%)
RRM2_Bruno_like 381..461 CDD:241080 48/83 (58%)
RRM_SF 801..892 CDD:302621 70/96 (73%)
celf2XP_012813883.1 RRM1_CELF1_2_Bruno 68..151 CDD:241075 55/82 (67%)
ELAV_HUD_SF 71..554 CDD:273741 252/628 (40%)
RRM2_CELF1_2 160..244 CDD:241078 48/83 (58%)
RRM3_CELF1_2 469..558 CDD:241082 70/88 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7190
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H4783
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2990
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.050

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