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Protein Alignment fdl and Hexa

DIOPT Version :9

Sequence 1:	NP_725178.2	Gene:	fdl / 250735	FlyBaseID:	FBgn0045063	Length:	673	Species:	Drosophila melanogaster
Sequence 2:	NP_001004443.1	Gene:	Hexa / 300757	RGDID:	2792	Length:	528	Species:	Rattus norvegicus

Alignment Length:	600	Identity:	174/600 - (28%)
Similarity:	263/600 - (43%)	Gaps:	119/600 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    99 ISCSMTCGDVNIWPHPTQKFLLSSQTHSFSVEDVQLHVDTAHREVR---KQLQLAFDWFLKDLRL 160
            ::.::.|....:||.|.                   ::.|:||...   ...|..:
  Rat    12 LAAALACLATALWPWPQ-------------------YIQTSHRRYTLYPNNFQFRY--------- 48

  Fly   161 IQRLDYVGSSSEPTVSESSSKSRHHADLEPAATLFGA------TFGVKKAGDLTSVQVKISVLKS 219
                 :.||:::..........|.:..|     |||:      :|. ||...|....:.:||:.:
  Rat    49 -----HAGSAAQAGCVVLDEAFRRYRSL-----LFGSGSWPRPSFS-KKQQPLGKNILMVSVVTA 102

  Fly   220 GDLNF-SLDNDETYQLSTQTEGHRLQVEIIANSYFGARHGLSTLQQLIWFDDEDHLLHTYAN-SK 282
            ....| :|::.|.|.|:...:    |..:.:.:.:||..||.|..||:|...|...   :.| :|
  Rat   103 ECNEFPNLESVENYTLTINDD----QCLLSSETVWGALRGLETFSQLVWKSAEGTF---FINKTK 160

  Fly   283 VKDAPKFRYRGLMLDTSRHFFSVESIKRTIVGMGLAKMNRFHWHLTDAQSFPYISRYYPELAVHG 347
            :.|.|:|.:||::||||||:..:.||..|:..|...|.|.|||||.|..||||.|..:|||...|
  Rat   161 ITDFPRFPHRGILLDTSRHYLPLSSILNTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELTRKG 225

  Fly   348 AYSE-SETYSEQDVREVAEFAKIYGVQVIPEIDAPAHAGNGWDWGPKRGM-GELAMCINQQPWSF 410
            :::. :..|:.|||:||.|:|::.|::|:.|.|.|.|.   ..||  .|: |.|..|
  Rat   226 SFNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT---LSWG--AGVPGLLTPC-------- 277

  Fly   411 YCG---EPPCGQLNPKNNYTYLILQRIYEELLQHTGPTDFFHLGGDEVNLDCWAQYFN------- 465
            |.|   ....|.:||..|.||..:...:.| :....|..:.|||||||:..||....|
  Rat   278 YSGSRLSGTYGPVNPSLNSTYDFMSTFFLE-ISSVFPDFYLHLGGDEVDFTCWKSNPNIQAFMKK 341

  Fly   466 --DTDLRGLWCDFMLQAMARLKLANNGVAPKHVAVWSSALTN-TKCLPNSQFTVQVWGGST---- 523
              .||.:.|. .|.:|.:  |.:.::  ..|...||.....| .|..|::  .:|||....
  Rat   342 KGFTDYKQLE-SFYIQTL--LDIVSD--YDKGYVVWQEVFDNKVKVRPDT--IIQVWREEMPVQY 399

  Fly   524 WQENYDLLDNGYNVIFSHVDAWYLD-CGFGSWRATGDAACAPYRTWQNVYKHRPWERMRLDKKRK 587
            .:|...:...|:..:.|  ..|||: ..:|.             .|:.:||..|. ..|....:|
  Rat   400 MKEIEAITQAGFRALLS--APWYLNRVKYGP-------------DWKEMYKVEPL-AFRGTPAQK 448

  Fly   588 KQVLGGEVCMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVE 652
            ..|:|||.|||.|.||...|..|||||..|:|||||:. :...:||.    .|:|:|.||..|:.
  Rat   449 ALVIGGEACMWGEYVDSTNLVPRLWPRAGAIAERLWSS-NLTTNMDF----AFKRLSHFRCELLR 508

  Fly   653 LGIRAEALFPKYCAQ 667
            .||:|:.:...||.|
  Rat   509 RGIQAQPISVGYCEQ 523

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.