DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scarb1 and CG10345

DIOPT Version :9

Sequence 1:XP_038945027.1 Gene:Scarb1 / 25073 RGDID:2302 Length:516 Species:Rattus norvegicus
Sequence 2:NP_650563.2 Gene:CG10345 / 42017 FlyBaseID:FBgn0027562 Length:552 Species:Drosophila melanogaster


Alignment Length:477 Identity:108/477 - (22%)
Similarity:181/477 - (37%) Gaps:118/477 - (24%)


- Green bases have known domain annotations that are detailed below.


  Rat    81 YHDSHGALAHQAAGAQECPHRPQQPVLWDVEGDPCSLLLVRLLLRGGQPQRGPKWPEASSPGART 145
            |::|:..:.:  :..:|....|::.|     |||   .:.|:        |.|..|   ..|..|
  Fly   108 YNESNNTITY--SPKREYVFAPERSV-----GDP---KIDRI--------RAPNIP---LMGVTT 151

  Rat   146 LCLQGGAVMMEDKPTSLKLLMTLGL--VT--MGQRAFMNRTVGEILWGYEDPFVNFLSKYFPDMF 206
            |.            :||.:...|||  :|  :..:..:..:|.:.:|||||..|...|::.|:..
  Fly   152 LA------------SSLSMFAALGLSAITRQLNSQPMLEMSVHDYMWGYEDHLVELASRFVPNWI 204

  Rat   207 PI--------------------------KGKFGLFVGMNDSSSGVFTVFTGVQNFSKIHLVDKWN 245
            ..                          |.|:|:  .|.|:..|              :.||..|
  Fly   205 DFSSFGIMEKLFREGNESNVFNMNLPEPKDKYGM--RMTDAPRG--------------YTVDSIN 253

  Rat   246 GLSEVNYW-HSEQ-----CNMINGTAGQMWAPFMTPESSLEFF--SPEACRSMKLTYQESRVFEG 302
            |......| ::|:     ||.|.|:......|....|:. |||  ....||.:.:.:..:..|.|
  Fly   254 GERGFKGWQYNEETNGTMCNRIWGSHDATLFPLDMDEND-EFFLYRRTFCRRLPVKFNRTTTFNG 317

  Rat   303 IPTYRFT-APDTL-----FANGSVYPPNEGFCPCRESGIQNVSTCRFGAPLFLSQPHFYNADPVL 361
            :..:.|. .||:.     .||.|.|..|.   .|.:.|:.|||.|.:..||.::.|||.:|||.|
  Fly   318 LDAFEFVMEPDSFDSEVDNANSSCYCKNN---RCLKKGVGNVSPCYYNIPLAITYPHFMHADPSL 379

  Rat   362 SEAVLGLNPDPKEHSLFLDIHPVTGIPM-NCSVKMQLSLYIKSVKGVGQTGKIEPVVLPLLWFEQ 425
            .|...||.|:....:....:.|..|.|| ...:::|.:..:..|.........|.::|||||.:.
  Fly   380 LEPFDGLQPNVSRFTSTFVVQPQLGAPMQGTHLRLQANQVVGKVNFNRMMTPFENMILPLLWVDL 444

  Rat   426 SGMMGGKTLNTFYTQLVLMPQVLHYAQYVLLGLGGLLLLVPIIYQLRSQEKCFLFWSGSKKGSQD 490
            :       ::.....|.|:...:.:...:|.....|.:|:..:|||.| .....||..:::..: 
  Fly   445 N-------IDVLCLTLRLLIHGIKWGFPLLQWSAALGMLLAGVYQLCS-ALLLCFWPTARQFQK- 500

  Rat   491 KEAMQAYSESLMSPAAKGTVLQ 512
                       :....:||.:|
  Fly   501 -----------VDQVERGTAVQ 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Scarb1XP_038945027.1 CD36 <148..454 CDD:395898 81/350 (23%)
CG10345NP_650563.2 CD36 21..488 CDD:279474 103/440 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342078
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.850

Return to query results.
Submit another query.