Sequence 1: | XP_038936774.1 | Gene: | Myo5a / 25017 | RGDID: | 3143 | Length: | 1880 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001162991.1 | Gene: | Mhc / 35007 | FlyBaseID: | FBgn0264695 | Length: | 1962 | Species: | Drosophila melanogaster |
Alignment Length: | 2062 | Identity: | 565/2062 - (27%) |
---|---|---|---|
Similarity: | 923/2062 - (44%) | Gaps: | 389/2062 - (18%) |
- Green bases have known domain annotations that are detailed below.
Rat 4 SELYTKFARVWIPDPEEVWKSAELLKDYK--PGDKVLLLHLEEGKDLEYRLDPKTSELPHLRNPD 66
Rat 67 ILVGENDLTALSYLHEPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQN 131
Rat 132 MGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGS-------ASE 189
Rat 190 ANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAE 254
Rat 255 EERNYHIFYQLCASAKLPEFK--MLRLGNADSFHYTKQGGSPMIEGVDDAKEMAHTRQACTLLGI 317
Rat 318 SESYQMGIFRILAGILHLGNVGFASRDSDSCTIPPKHEPLIIFCDLMGVDYEEMCHWLCHRKLAT 382
Rat 383 ATETYIKPISKLQATNARDALAKHIYAKLFNWIVGHVNQALHSAVKQHSFIGVLDIYGFETFEIN 447
Rat 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQPCINLIESKLGILDLLDE 511
Rat 512 ECKMPKGTDDTWAQKLYNTHLNKCALFEKPRMSNKA-----FIIKHFADKVEYQCEGFLEKNKDT 571
Rat 572 VFEEQIKVLKSSKFKMLPELFQDDEKAISPTSATSSGRTPLTRVPVKPTKGRPGQTAK--EHKK- 633
Rat 634 ----TVGLQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISA 694
Rat 695 AGFPSRWTYQEFFSRYRVLMKQ--KDVLGDRKQTCQNVLEKLILDKDKYQFGKTKIFFRAGQVAY 757
Rat 758 LEKLRADKLRAACIRIQKTIRGWLLRKRY--LCMQRAAI-TVQRYVRGY-QARCYA--KFLRRTK 816
Rat 817 AATTIQK----YWRMYVVRRKYKIRRAATIVLQSYLRGYLARNRYRKILREHKAVIIQKRVRGWL 877
Rat 878 ARTHYKRTMKAIIYLQCCFRRMMAKRELKKLKIEARSVERYKKLHIGMENKIMQLQRKVDEQNKD 942
Rat 943 YKCLMEKLTNLE-GVYNSETEKLRNDVERLQLSEE-------------------EAKVATGRVLS 987
Rat 988 LQEE----IAKLRKDLEQTRSEKKSIEERADKYKQETEQLVSNLKEENTLLKQEKETLNHLMVEQ 1048
Rat 1049 AKEMTETMERKLVEETKQLELDLNDER---LRYQNLLNEFSRLEERYDDLKEEMTLMLNV-PKPG 1109
Rat 1110 HKRTDSTHSSNESEYTFSSEFAETEDIAPRTEE---PTEKKVPLDMSLFLKLQKRVTELEQEKQL 1171
Rat 1172 MQDELDRKEEQVLRSKAKEEERPQIRGAELEYESLKRQELESENKKLKNE----LNELRKAL--- 1229
Rat 1230 -SEKSAPEVTAPGAPAYRVLMEQLTAVSEEL----------DVRKEEVLILRSQLVSQKEAIQPK 1283
Rat 1284 DDK--NTMTDSTILLEDVQKMKDKGEIAQAYI------------GLKETNRSSAMDYQEL----- 1329
Rat 1330 --NEDGELW-LVYEG--------LKQANRLLESQLQSQKRSHEN----------EAEALRGEIQS 1373
Rat 1374 LKEENNR--------------------QQQLLAQNLQLPPEARIEASLQHEITRLTNENLYFEEL 1418
Rat 1419 YADDPKKYQSYR---ISLYKRMIDLMEQLEKQDKTVRKLKKQLKVFAKKIGELEVG--------- 1471
Rat 1472 QMEN------ISPGQIIDEPIRPVNIPRKEKDFQGMLEYKREDEQKLVKNLILELKPRGVAVNLI 1530
Rat 1531 PGLPAYI--LFMCVRHADYLN-DDQKVRSLLTSTINSIKKVLKKRGDDFETVSFWLSNTCRFLHC 1592
Rat 1593 LKQYSGEEGFMKHNTSRQNEHCLTNFDLAEYRQVLSDL---AIQIYQQLVRVLENILQPMIVSGM 1654
Rat 1655 LEHETIQGVSGVKPTGLRKRTSSIADEGTYTLDSILRQLNSFHSVMCQHGMDPELIKQVVKQMFY 1719
Rat 1720 IVGAITLNNLL------------LRKDMCSWSKGMQIRYN-------------VSQLEEWLRD-- 1757
Rat 1758 --------------KNLMNSGAK---------------ETLEPLI-QAAQLLQVKKKTDDDAEAI 1792
Rat 1793 CSMCNALTTAQIVKVLNLYTPVNEFEERVSVSFIRTIQVRLRDRKDS 1839 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Myo5a | XP_038936774.1 | COG5022 | 7..1275 | CDD:227355 | 437/1352 (32%) |
MYSc_Myo5 | 83..751 | CDD:276831 | 282/691 (41%) | ||
Smc | 1157..>1484 | CDD:224117 | 80/422 (19%) | ||
Myo5a_CBD | 1506..1880 | CDD:271262 | 72/397 (18%) | ||
Mhc | NP_001162991.1 | Myosin_N | 36..73 | CDD:280832 | 15/45 (33%) |
MYSc | 81..777 | CDD:214580 | 291/722 (40%) | ||
MYSc_Myh1_insects_crustaceans | 100..765 | CDD:276874 | 282/691 (41%) | ||
Myosin_tail_1 | 842..1897 | CDD:279860 | 228/1180 (19%) | ||
V_Alix_like | 1557..1877 | CDD:187408 | 67/373 (18%) | ||
ATP-synt_B | <1671..1771 | CDD:304375 | 28/129 (22%) | ||
TMPIT | 1739..>1825 | CDD:285135 | 16/90 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000014 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |