DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo5a and ck

DIOPT Version :9

Sequence 1:XP_038936774.1 Gene:Myo5a / 25017 RGDID:3143 Length:1880 Species:Rattus norvegicus
Sequence 2:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster


Alignment Length:2256 Identity:578/2256 - (25%)
Similarity:904/2256 - (40%) Gaps:618/2256 - (27%)


- Green bases have known domain annotations that are detailed below.


  Rat    17 DPEEVWKSAELLKDYKPGDKVLLLHLEEGKDLEYRLDPKTSELPHLRNPDILVGENDLTALSYLH 81
            |.:|||.:        |..::..:|...                       :.|..|:.:|..||
  Fly    42 DGDEVWLA--------PERRIKAMHASS-----------------------VQGVEDMISLGDLH 75

  Rat    82 EPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEA 146
            |..:|.||.:|:.:: |||||.|.:|||:|||:.||||..|.|..|..:.:|::.|||||:.:.|
  Fly    76 EAGILRNLLIRYKEN-LIYTYTGSILVAVNPYQILPIYTGDQIKLYKERKIGELPPHIFAIGDNA 139

  Rat   147 YKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKT 211
            |..|.|..::|.|::|||||||||.|.|..::|.|.:||..|.  :|:::|.:|||:|:.|||||
  Fly   140 YAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISGKHSW--IEQQILEANPILEAFGNAKT 202

  Rat   212 TRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAKLPEFKM 276
            .||||||||||||:|.|.....|.||.:..|||||||:|.|...|||||:||.:.|.....|...
  Fly   203 IRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFYCILAGLSADEKSR 267

  Rat   277 LRLGNADSFHYTKQGGSPMIEGVDDAKEMAHTRQACTLLGISESYQMGIFRILAGILHLGNVGFA 341
            |.||.|..:.|...|.|...||.|||.|.:..|.|..:|..|:.....|.::||.:||.||:.:.
  Fly   268 LDLGMAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVLLFSDQEIWEIIKLLAALLHCGNIKYK 332

  Rat   342 SR--DSDSCTIPPKHEPLIIFCDLMGVDYEEMCHWLCHRKLATATETYIKPISKLQATNARDALA 404
            :.  |:...|..|:|..:.....|:|:..:.:...|..|.|....||.:..:|:.|:.:.|||..
  Fly   333 ATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFAHGETVVSTLSRDQSVDVRDAFV 397

  Rat   405 KHIYAKLFNWIVGHVNQALHS-AVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMH 468
            |.||.::|..||..:|.|:.. .....:.||||||:|||.|:.|||||||||||||.|||.|..|
  Fly   398 KGIYGRMFVHIVRKINTAIFKPRGTSRNAIGVLDIFGFENFDQNSFEQFCINYANENLQQFFVQH 462

  Rat   469 VFKLEQEEYMKEQIPWTLIDFYDNQPCINLIESK-LGILDLLDEECKMPKGTDDTWAQKLYNTHL 532
            :||||||||..|.|.|..|:|.|||..::||..| |.|:.|:|||.:.|||||.|...||:.|| 
  Fly   463 IFKLEQEEYNHEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEEARFPKGTDQTMLAKLHKTH- 526

  Rat   533 NKCALFEKPRMS-NKAFIIKHFADKVEYQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDE 596
            .....:.||:.. |.:|.:.|||..|.|...|||:||:||...:.:.::..|..|.|.::|..|.
  Fly   527 GSHKNYLKPKSDINTSFGLNHFAGVVFYDTRGFLDKNRDTFSPDLLHLVSQSTNKFLRQIFAQDI 591

  Rat   597 KAISPTSATSSGRTPLTRVPVKPTKGRPGQTAKEHKKTVGLQFRNSLHLLMETLNATTPHYVRCI 661
            :    ..|.:..|||                      |:..|||.||..||:||::..|.::|||
  Fly   592 E----MGAETRKRTP----------------------TLSTQFRKSLDALMKTLSSCQPFFIRCI 630

  Rat   662 KPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLGDRKQT 726
            |||:.|.|..||.....:|||..|::|||||..||:|.|..::||..|||.|:  ..|....:..
  Fly   631 KPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFLI--PGVPPAHRTD 693

  Rat   727 CQNVLEKL---ILDKDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRGWLLRKRYLC 788
            ||....::   :|.|..||.|.||:|.:.....:||:.|...|....:.:|::||||:.|:|:|.
  Fly   694 CQAATSRICAVVLGKSDYQLGHTKVFLKDAHDLFLEQERDRVLTRKILILQRSIRGWVYRRRFLR 758

  Rat   789 MQRAAITVQRYVRGYQARCYAKFLRRTKAATTIQKYWRMYVVRRKYKIRRAATIVLQSYLRGYLA 853
            ::.|||||||                         :|:.|..|::|:..|...:.||:.:|..:.
  Fly   759 LRAAAITVQR-------------------------FWKGYAQRKRYRNMRVGYMRLQALIRSRVL 798

  Rat   854 RNRYRKILREHKAVIIQKRVRGWLARTHYKRTMKAIIYLQCCFRRMMAKRELKKLKIE------- 911
            .:|:|. ||.| .|.:|...||:|.|..|...|.|:|.:|...|||:|.|..:||::|       
  Fly   799 SHRFRH-LRGH-IVGLQAHARGYLVRREYGHKMWAVIKIQSHVRRMIAMRRYRKLRLEHKQFAEV 861

  Rat   912 --ARSVERYKKLHIGMENKIMQLQRKVDEQNKDYKCLMEKLTNLEGVYNSETEKLR--------- 965
              .|.:|..:.||.|.::     .|::.||:  |:..:.:|...|  ...:.|..|         
  Fly   862 LQLRKLEEQELLHRGNKH-----AREIAEQH--YRDRLHELERRE--IQEQLENRRRVEVNMNII 917

  Rat   966 NDVERLQLSEEEAKVATGRVLSLQEEI----------------AKLRKDLEQTRSEKKSIEERAD 1014
            ||..|    ::|..|..|:::....:.                ..:..||...::..:. :..|.
  Fly   918 NDAAR----KQEEPVDDGKLVEAMFDFLPDSSSDAPTPHGGRETSVFNDLPHAQNVNQD-DIIAP 977

  Rat  1015 KYKQETEQLVSNLKEENTLLKQEKETLNHLMVEQAKEMTETMERKLVEETKQLELDLNDERLRYQ 1079
            .:..|.|:.:|..|.:.......:..:||...::|      ::..|      |.|....::|..|
  Fly   978 IHISEDEEDLSEFKFQKFAATYFQGNVNHQYAKKA------LKHPL------LPLHTQGDQLAAQ 1030

  Rat  1080 NLLNEFSRLEERYDDLKEEMTLMLNVPKPGH---KRTDSTHSSNESEYTFSSEFAETEDIAPRTE 1141
            .|.....|...             ::|:|.:   .|.|:|...::...|....|.       |::
  Fly  1031 ALWITILRFTG-------------DMPEPKYHTMDRMDTTSVMSKVTATLGRNFI-------RSK 1075

  Rat  1142 EPTEKK-VPLDMSLFLKLQKRVTE-------LEQEKQLMQDELDRKEEQVLRSKAKE---EERPQ 1195
            |..|.: :.||...|||.:.|...       |:::.:|.:|...|.::....:.:.:   :.||.
  Fly  1076 EFQEAQLMGLDPDAFLKQKPRSIRHKLVSLTLKRKNKLGEDVRRRLQDDEYTADSYQSWLQSRPT 1140

  Rat  1196 IRGAELEY---ESLKRQELESE-----NKKLKNELNELRK----------------ALSEKSAPE 1236
            ....:|.:   ..:.|.||..|     .|:|.|  |.|:.                |.|||....
  Fly  1141 SNLEKLHFIIGHGILRAELRDEIYCQICKQLTN--NPLKSSHARGWILLSLCVGCFAPSEKFVNY 1203

  Rat  1237 VTA---PGAPAYRVLMEQLTAVSEELDVRKEEVLILRSQLVSQKEAIQ-PKD--DKNTMT----D 1291
            :.|   .|.|.|....|:....:.....|.:....|..|....|:.|. |..  |.||.|    .
  Fly  1204 LRAFIREGPPGYAPYCEERLKRTFNNGTRNQPPSWLELQATKSKKPIMLPITFMDGNTKTLLADS 1268

  Rat  1292 STILLEDVQKMKDKGEIA-----QAYIGL--KETNRSSAMDYQELNEDGELWLVYEGLKQANRLL 1349
            :|...|...::.||..:.     ..||.|  |.::..|..|:           |.:.:.|..:..
  Fly  1269 ATTARELCNQLSDKISLKDQFGFSLYIALFDKVSSLGSGGDH-----------VMDAISQCEQYA 1322

  Rat  1350 ESQLQSQKR-------------------SHENEA------EALR----GEIQSLKEENNRQQQLL 1385
            :.| .:|:|                   :|:..|      :.:|    ||.:..|||:  ...:.
  Fly  1323 KEQ-GAQERNAPWRLFFRKEIFAPWHEPTHDQVATNLIYQQVVRGVKFGEYRCDKEED--LAMIA 1384

  Rat  1386 AQNLQLPPEARIEASLQHEITRLTN---------------------ENLYFEELYADD---PKK- 1425
            ||...:  |...:.|::...|.|.|                     ...|.:..|..|   |.| 
  Fly  1385 AQQYFI--EYSTDMSMERLFTLLPNFIPDFCLSGVDKAIERWAALVLQAYKKSYYVKDKIAPLKI 1447

  Rat  1426 -------------------YQSYRIS-----------------LYKRMIDLMEQL---------- 1444
                               |::||.|                 :|  ::|..||:          
  Fly  1448 KEDIVSYAKYKWPLLFSRFYEAYRNSGPNLPKNDVIIAVNWTGVY--VVDDQEQVLLELSFPEIT 1510

  Rat  1445 ----EKQDK---------TVR-----------------------KLKKQLKV------------- 1460
                :|.:|         |||                       .|||:.|.             
  Fly  1511 AVSSQKTNKVFTQTFSLSTVRGEEFTFQSPNAEDIRDLVVYFLDGLKKRSKYVIALQDYRAPSDG 1575

  Rat  1461 -----FAKKIGELEVGQMENISPGQII-----------------DEPIRPVNI-PRKEKDFQGML 1502
                 |.|  |:|.:  :|:.|.|:.:                 |.|...|.: |...|..|.:|
  Fly  1576 TSFLSFFK--GDLII--LEDESCGESVLNNGWCIGRCDRSQERGDFPAETVYVLPTLSKPPQDIL 1636

  Rat  1503 EYKREDEQKLVKNLIL-----ELKPRGVAVNLIPGLPAYILFMCVRHADYLNDDQKVRSLLTSTI 1562
            .....:|....:.|.:     .::||.....|:    .|.|       |:.....|.....|.|:
  Fly  1637 ALFNIEEAHHGRRLSMASNGGAVEPRDRPHTLM----EYAL-------DHFRLPPKRTMSKTLTL 1690

  Rat  1563 NS-------------IKKVLKKRGDDFETVSFWLSNTCRFLHCLKQYSGE--------------- 1599
            :|             ||..|.::   .::...:....|.....:.:|.|:               
  Fly  1691 SSKRSEELWRYSRDPIKAPLLRK---LQSKEEFAEEACFAFAAILKYMGDLPSKRPRMGNEITDH 1752

  Rat  1600 --EGFMKHNTSRQNEHCLTNFDLAEYRQVLSD--------LAIQIYQQLVRVLENILQPMIVSGM 1654
              :|.:||...|...:|.....|.:.|..:|:        ||..::.....:|:.:|        
  Fly  1753 IFDGPLKHEILRDEIYCQLMKQLTDNRNRMSEERGWELMWLATGLFACSQGLLKELL-------- 1809

  Rat  1655 LEHETIQGVSGVKPTGLRKRTSSIADEGTYTLDSILRQLNSFHSVMCQHGMDPELIKQVVKQMFY 1719
                          ..||.|...|:.:..:.|...:|.....:.   .|.::.|.|:....|:|:
  Fly  1810 --------------LFLRTRRHPISQDSMHRLQKTIRHGQRKYP---PHQVEVEAIQHKTTQIFH 1857

  Rat  1720 IV-------GAITLNNLLLRKDMC-SWSKGMQIRYN-------------------------VSQL 1751
            .|       .|..:::....||.| :.|:.:.:|.:                         |..|
  Fly  1858 KVYFPDDTDEAFEVDSSTRAKDFCNNISQRLSLRTSEGFSLFVKIADKVISVPEGDFFFDFVRHL 1922

  Rat  1752 EEWLRDKNLMNSGAK--------------------------------ETLEPLIQ---------- 1774
            .:|::....:..||.                                :.|..|::          
  Fly  1923 TDWIKKARPIRDGANPQFTYQVFFMKKLWTNTVPGKDRNADLIFHYHQELPKLLRGYHKCSREEA 1987

  Rat  1775 ---AAQLLQVK-KKTDDDAEAICSMCNALTTAQIVKV-------LNLYTPVNE----FEERVSVS 1824
               ||.:.:|: .:...:.:||..|...|..:.|:|:       .::....|:    ..|...|:
  Fly  1988 AKLAALVFRVRFGENKQELQAIPQMLRELIPSDIMKIQSTSEWKRSIVASYNQDGGMTSEDAKVA 2052

  Rat  1825 FIRTI-----------QVRLRDRKDSPQLLMDA--KH----IFPVT 1853
            |::.:           :|:.....:.|::|:.|  ||    |.|||
  Fly  2053 FLKIVYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPVT 2098

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo5aXP_038936774.1 COG5022 7..1275 CDD:227355 427/1340 (32%)
MYSc_Myo5 83..751 CDD:276831 284/675 (42%)
Smc 1157..>1484 CDD:224117 96/548 (18%)
Myo5a_CBD 1506..1880 CDD:271262 78/498 (16%)
ckNP_001285949.1 MYSc 64..733 CDD:214580 292/700 (42%)
MYSc_Myo7 77..721 CDD:276832 284/675 (42%)
MyTH4 <1138..1245 CDD:214535 24/108 (22%)
B41 1251..1467 CDD:214604 40/231 (17%)
FERM_B-lobe 1355..1439 CDD:271216 16/87 (18%)
FERM_C1_MyoVII 1461..1559 CDD:270019 15/99 (15%)
SH3 1560..1624 CDD:302595 11/67 (16%)
MyTH4 1701..1849 CDD:214535 26/175 (15%)
B41 1856..2068 CDD:214604 28/211 (13%)
FERM_M 1966..2068 CDD:278785 15/101 (15%)
FERM_C2_MyoVII 2064..2159 CDD:270020 10/35 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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