DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vars1 and AIMP3

DIOPT Version :9

Sequence 1:NP_445744.1 Gene:Vars1 / 25009 RGDID:3950 Length:1264 Species:Rattus norvegicus
Sequence 2:NP_660194.1 Gene:AIMP3 / 246507 FlyBaseID:FBgn0050185 Length:179 Species:Drosophila melanogaster


Alignment Length:114 Identity:28/114 - (24%)
Similarity:48/114 - (42%) Gaps:37/114 - (32%)


- Green bases have known domain annotations that are detailed below.


  Rat    90 SRAA----VLVQQWVSYADTELTPAACGATLPALGLRGPGQDPQAALGALGKALNP--LEEWLRL 148
            |||:    ..|.||:.::...:.|                       |:..|.::.  |.::.:|
  Fly    61 SRASREVEAQVYQWIEFSVLYVAP-----------------------GSKDKYVSKQLLADFNKL 102

  Rat   149 ---HTYLAGDAPTLADLAAVTALLLPFRYV--LDPSARRIWGNVTRWFN 192
               .:||.|...||||||...|:   :..|  |.|..:.::.|::|||:
  Fly   103 FASKSYLVGHFITLADLAVYYAI---YDLVKSLSPVDKEVYLNLSRWFD 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vars1NP_445744.1 GstA <56..203 CDD:223698 28/114 (25%)
GST_C_family 92..213 CDD:295467 26/112 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..296
PTZ00419 282..1264 CDD:240411
ValRS_core 335..938 CDD:185677
'HIGH' region 344..354
tRNA-synt_1_2 513..640 CDD:290334
'KMSKS' region 862..866
Anticodon_Ia_Val 938..1075 CDD:153416
Val_tRNA-synt_C 1196..1258 CDD:287436
AIMP3NP_660194.1 GST_C_AIMP3 65..166 CDD:198338 25/110 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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