DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ceacam3 and nrm

DIOPT Version :9

Sequence 1:NP_036834.2 Gene:Ceacam3 / 24926 RGDID:2333 Length:709 Species:Rattus norvegicus
Sequence 2:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster


Alignment Length:778 Identity:157/778 - (20%)
Similarity:275/778 - (35%) Gaps:220/778 - (28%)


- Green bases have known domain annotations that are detailed below.


  Rat     2 ELSSVLPCK-RCTPWRGLLLTASLLTCWLLPTTAQVSIESLPPQVVEGENVLLRVD-NLPENLIA 64
            :|:..:.|: :....:.:.:|...:...:.||:  :.|..:....|:|..|:|..| :.....:.
  Fly   235 DLAQDIECRVKSAAIQNVTVTKFSVDLQVRPTS--IDINGVKHHTVQGSKVVLTCDIHGARPAVN 297

  Rat    65 FVWYKGLTNMSLG------VALYSLTYNVTVTGPVHSGRETLYSNGSLWIQNVTQKDTGFYTLRT 123
            ..||...|.:|.|      |...||..:   .|..|:..|.:::........|.:.:.....|:.
  Fly   298 LTWYNTTTIISSGENEITEVRSKSLEKS---DGTFHTQSELIFNATRFENDRVFRCEAENIVLQI 359

  Rat   124 ISNHGEIVSNTSLHLHVYFSTLTCGRAATSAQLSIESVPTSISKGESALLLAH-----NLPENLR 183
              |..:.:| ::|.|.|.:..:            ::..|::|:...|.::|.:     | |.:|.
  Fly   360 --NREKPIS-SALTLEVLYPPV------------VKVSPSAITANTSEIVLLNCEYFAN-PASLT 408

  Rat   184 AIFWYKGAIVFKDLEVARYVIGTNSSVPGPAHNGRETMYSNGSLLLQNVTRNDAGFYTLKTLSTD 248
            .:.||:..|:....:...|..|.:.:|               :|::::..:.|.|.|:.: ||.:
  Fly   409 QVEWYRNDILVNVNDTTHYKGGNSENV---------------ALVIKSTEKEDIGNYSCQ-LSNN 457

  Rat   249 LKTEIAYVQLQVDTCFMSYAGPPTSAQLTVESAPTSVAEGASVLLLAHNL---PENLRAIFWYKG 310
            :....:..::.:|   :.||  ||...|.:...|...::.::|.|..:.|   |..|..:.||..
  Fly   458 IGKGTSDQKINLD---VQYA--PTVEILMIPEGPVKESDESNVTLFCNVLDANPSVLTKVRWYAN 517

  Rat   311 AILFKDLEVARYVIGTNSSVPGPAHSGRETMHSNGS-LLLQNVTR-----------NDAGFYTLR 363
            :.|.|:|             |....:..:..|.:.| |||:::.|           |.||:   .
  Fly   518 STLLKEL-------------PDCEETREDLCHIDPSKLLLESIGRGFFYNYSCEGFNAAGW---G 566

  Rat   364 TLSTDLKAKVVHVQLQVNTSSCCDPLTPAPLTIDPVPRHAAKGESVLLQVR----NLPEDLRMFI 424
            ..|.| |..:||.:             |.|..:...|..|.|.:||.....    ..||..| |.
  Fly   567 PRSED-KELLVHYE-------------PGPAALSHFPLVAVKKKSVTFSCSVDDPGFPESNR-FR 616

  Rat   425 WFKSVYTSQIFKIAEYSRAINYVFRGPAHSGRETVYTNGSLLLQDATEKD-----TGL-----YT 479
            |.:.                   .|||               |||...||     .||     |:
  Fly   617 WLRG-------------------GRGP---------------LQDIVTKDWTVEPVGLDSRTNYS 647

  Rat   480 LQIIYRNFKIETAHVQVSVHTCVHPSTTGQLVIESVPPNVVEGGDVLLLVHNMPENLQS------ 538
            ........|...|.|.:.||       .....|:::||...       ::|:.|....:      
  Fly   648 CYAYNEGGKGVMATVNLEVH-------APPFFIKNLPPYTG-------ILHSSPNATLTCRIECV 698

  Rat   539 ----FSWYKGVAIVNRHEISRNIIASNRSTLGPAHSGRETIYSNGSLLLH-NA---------TEE 589
                .||.|....:.|:: ||..|........||....|::.|    :|| |.         .|.
  Fly   699 PRCDISWQKDGVPIERND-SRYFIKEKYMDASPATGDFESMLS----VLHFNMPNWPDSKFNIEA 758

  Rat   590 DNGLYTLWTVNR------HSETQ-GIHVHIHIYKP----VAQPFIRVTESSVRVKSSVVLTCLS- 642
            ||..|:..:...      .|.|. ||.     |.|    |::..:.|.|.::..:    :.|.| 
  Fly   759 DNANYSCVSTGNIVGGSIRSRTYFGIE-----YAPENTTVSENIVYVQEDTIPGR----VICKSR 814

  Rat   643 ADTGTSIQWLFNNQNLRLTQRMLLSQTKCQLSIDPVRREDAGEYRCEVSNPVSS---KTSLPV 702
            |:...|.:|:|.|:.:.....::::..        :.|.|.|.|.|...|...|   ||.:.|
  Fly   815 ANPEPSYKWIFKNETIANGNALIINTA--------MNRNDDGTYTCLAYNKHGSSIAKTVIKV 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ceacam3NP_036834.2 Ig_CEACAM_D1 36..140 CDD:143251 23/110 (21%)
IG_like 45..137 CDD:214653 20/98 (20%)
Ig_CEACAM_D1 156..260 CDD:143251 19/108 (18%)
Ig_CEACAM_D1 276..380 CDD:143251 27/118 (23%)
Ig_CEACAM_D1 394..498 CDD:143251 24/117 (21%)
Ig_CEACAM_D1 510..614 CDD:143251 27/130 (21%)
Ig 616..706 CDD:299845 21/95 (22%)
nrmNP_001246890.1 Ig 44..152 CDD:299845
Ig 176..248 CDD:299845 2/12 (17%)
Ig 277..354 CDD:299845 17/79 (22%)
IG_like 383..463 CDD:214653 19/96 (20%)
Ig 394..463 CDD:143165 16/85 (19%)
Ig_3 585..652 CDD:290638 21/101 (21%)
Ig 685..>719 CDD:299845 6/34 (18%)
IG_like 788..869 CDD:214653 20/92 (22%)
Ig <811..869 CDD:299845 16/65 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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