DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabrb3 and Rdl

DIOPT Version :9

Sequence 1:NP_058761.2 Gene:Gabrb3 / 24922 RGDID:2651 Length:473 Species:Rattus norvegicus
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:544 Identity:182/544 - (33%)
Similarity:271/544 - (49%) Gaps:116/544 - (21%)


- Green bases have known domain annotations that are detailed below.


  Rat    37 VKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSG 101
            :...:|.....||.|:||::|||||.||:.:.:.||..:|||.||:||..||:|:|.|.||||..
  Fly    59 ISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK 123

  Rat   102 IP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMD 164
            .|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|::...:|:|.||:|.|:
  Fly   124 RPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMN 188

  Rat   165 LRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGA 229
            |:.:|:|.|.|.:||||:|||..||.::||.|..:|.....:|||||.::.||..:..:...||.
  Fly   189 LQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGN 253

  Rat   230 YPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLR 294
            |.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.||||||:||||||||:.:...
  Fly   254 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTN 318

  Rat   295 ETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK-----KLAEKTAKAKNDRS 354
            ..||||.|||:||:||..|||.||.:|||||.|.|:......::|:     |:||:..:..:..:
  Fly   319 AALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGAN 383

  Rat   355 KSEIN---------------------------------------------RVDAHGN-------I 367
            :.:.|                                             ...:||:       :
  Fly   384 QQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTV 448

  Rat   368 LLAPMDVHNEMNEV-----------------------AGSVGDTRNSAISFDNSGIQYRKQSMPK 409
            ...|:...|....|                       |.|.|.|..:.::....|.|..... |.
  Fly   449 SNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPG-PG 512

  Rat   410 EGHGRYMG-----------------DRSIPHKKTHLRRRSSQLKIKIPDLTDVNA--------ID 449
            :|.|...|                 :.::|   .||.......|:|     |:|.        ||
  Fly   513 QGGGPPGGGGGGGGGGGPPEGGGDPEAAVP---AHLLHPGKVKKVK-----DINKLLGITPSDID 569

  Rat   450 RWSRIVFPFTFSLFNLVYWLYYVN 473
            ::||||||..|..|||:||:.|::
  Fly   570 KYSRIVFPVCFVCFNLMYWIIYLH 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrb3NP_058761.2 LIC 10..471 CDD:273305 181/540 (34%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 75/182 (41%)
Neur_chan_memb 274..588 CDD:397193 90/322 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101786
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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