DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tbxas1 and Cyp28d2

DIOPT Version :9

Sequence 1:NP_036819.1 Gene:Tbxas1 / 24886 RGDID:3826 Length:533 Species:Rattus norvegicus
Sequence 2:NP_608911.1 Gene:Cyp28d2 / 33748 FlyBaseID:FBgn0031688 Length:501 Species:Drosophila melanogaster


Alignment Length:549 Identity:142/549 - (25%)
Similarity:236/549 - (42%) Gaps:96/549 - (17%)


- Green bases have known domain annotations that are detailed below.


  Rat    15 VVTVTLSVVLLALLKWYSTSAFSRLRKLGIRHPEPSPFVGNL--MFFRQGFWESHL-ELRERY-- 74
            |:.:||.|::...|.|    .|:..||.||:.....||||:.  :|.|:......: ::.|:|  
  Fly     9 VLVLTLLVLVYVFLTW----NFNYWRKRGIKTAPTWPFVGSFPSIFTRKRNIAYDIDDIYEKYKD 69

  Rat    75 -GPLCGYYLGRRMYIVISDPDMIKEVLVENFSNFSNRMASGLEPK----LIADSVLMLRDRRWEE 134
             ..:.|.:..|...:::..|:.|.::...:|.:|.|........|    ::.::..:|....|:|
  Fly    70 TDNMVGVFTTRVPQLLVMCPEYIHKIYATDFRSFHNNEWRNFVNKKTDMILGNNPFVLTGDEWKE 134

  Rat   135 VRGALMSAFSPEKLNEMTPLISQACELLLSHLKH----SAASG-DAFDIQRCYCCFTTNVVASVA 194
            .|..:|.|.||.::..:.|:....|:..:.:::.    :.:.| ||.|:..||   ||.||:...
  Fly   135 RRSEIMPALSPNRVKAVYPVSQSVCKKFVEYIRRQQQMATSEGLDAMDLSLCY---TTEVVSDCG 196

  Rat   195 FGIEVNSQDAPEDPFVQHCQRVF-------AFSTPRPLLALILSFPSIMVPLARILPNKNRDELN 252
            .|:...|......|.::..:|||       .:|....|...:..|.|:        |..|: |..
  Fly   197 LGVSAQSFTDTPTPLLKMIKRVFNTSFEFIFYSVVTNLWQKVRKFYSV--------PFFNK-ETE 252

  Rat   253 GFFNTLIRNVIALRDKQTAEERRGDFLQMVLDAQRSMSSVGVEAFDMVTEALSSAECMGDPPQRC 317
            .||..:||..|.|| .:..|::|.|||..:|..|..                             
  Fly   253 VFFLDIIRRCITLR-LEKPEQQRDDFLNYMLQLQEK----------------------------- 287

  Rat   318 HPTSTAKPLTVDEIAGQAFLFLIAGHEITTNTLSFITYLLATHPECQERLLKEV---DLFMEKHP 379
                  |.|..|.|......|::.|.|.|...|:.|..:|..:||.|:::.||:   ||..::  
  Fly   288 ------KGLHTDNILINTMTFILDGFETTALVLAHIMLMLGRNPEEQDKVRKEIGSADLTFDQ-- 344

  Rat   380 APEYCNLQEGLPYLDMVVAETLRMYPPAFRFTREAAQDCEVLGQ-----HIPAGSVLEIAVGALH 439
                   ...||:||..:.||||::.|.....:...:..|...:     |:..|.|:.|.|.|||
  Fly   345 -------MSELPHLDACIYETLRLFSPQVAARKLVTEPFEFANKNGRTVHLKPGDVVTIPVKALH 402

  Rat   440 HDPEHWPNPETFDPERFTAEARLQQKPF----TYLPFGAGPRSCLGVRLGLLVVKLTLLQVLHKF 500
            |||:::.:|.||.||||........|.:    .||.||.|||.|.|:|..|..:|..|:::|..|
  Fly   403 HDPQYYEDPLTFKPERFLESNGGGMKSYRDRGVYLAFGDGPRHCPGMRFALTQLKAALVEILRNF 467

  Rat   501 RFEACPETQVPLQLESKSALCP-KNGVYV 528
            ..:..|:|:...|::....:.. |.|:|:
  Fly   468 EIKVNPKTRSDNQIDDTFFMATLKGGIYL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbxas1NP_036819.1 p450 47..530 CDD:278495 131/517 (25%)
Cyp28d2NP_608911.1 p450 38..475 CDD:299894 126/493 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0158
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264519at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X40
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.780

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