DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gclm and F53F1.3

DIOPT Version :9

Sequence 1:NP_001262845.1 Gene:Gclm / 248194 FlyBaseID:FBgn0046114 Length:285 Species:Drosophila melanogaster
Sequence 2:NP_506323.1 Gene:F53F1.3 / 186169 WormBaseID:WBGene00009981 Length:283 Species:Caenorhabditis elegans


Alignment Length:276 Identity:54/276 - (19%)
Similarity:90/276 - (32%) Gaps:90/276 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YDGLKITLHTDSTAERVVVEKEIDELHGRVQRATQELTTRLTENGRNEISIGAKIFLNRH----- 93
            ||...|.|.|    .:::.::.:..|...:....:...|....|...||....:|.|.:|     
 Worm     9 YDCPLIGLGT----YKIIGDQVLPVLDAALTAGYRLFDTAKVYNNEKEIGDALEILLPKHNLKRE 69

  Fly    94 -----------STESVNQAVEELLHILSVTHVDNVVLAYHPNAVATATPVATTKPPCSED----- 142
                       :.|:|.:.|:|.|.:|..:::|..::.|                |.|.|     
 Worm    70 DIFITTKMHPNTVENVKKLVDESLSLLKTSYIDMYLIHY----------------PKSFDYGDQD 118

  Fly   143 --SNVSRATNWSQRNGKEGVAELKELYKTLEQYALKQQITQLGIADLDAAALEELHNSAQVVPTI 205
              :...|...|:.      :.|.|...|          |..:|::..:...||||.:..:     
 Worm   119 PMNKTLRIATWND------LWECKNAGK----------IRSVGVSSFEIRHLEELKDLGK----- 162

  Fly   206 AQVNLSTCC--------VVPPELQEFCTAHDI------QLNTHSDPELLLPVEQFDGL-----VP 251
               |...||        ....||:.:|.:..|      .|..|:  |.||..|....|     ||
 Worm   163 ---NFPPCCNQVEYHPHFTREELKNYCKSEGIFFQAFSSLARHN--ETLLSSEIITRLAEKYHVP 222

  Fly   252 GYTI--DWTLRYQVHV 265
            ..|:  .|....:|.:
 Worm   223 KTTVLLSWATSQKVGI 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GclmNP_001262845.1 Aldo_ket_red <79..>238 CDD:294321 36/195 (18%)
F53F1.3NP_506323.1 AKR_AKR1-5-like 12..265 CDD:381297 52/273 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0656
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.