DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slc4a2 and Ndae1

DIOPT Version :9

Sequence 1:NP_058744.1 Gene:Slc4a2 / 24780 RGDID:3711 Length:1234 Species:Rattus norvegicus
Sequence 2:NP_723263.2 Gene:Ndae1 / 34005 FlyBaseID:FBgn0259111 Length:1190 Species:Drosophila melanogaster


Alignment Length:1055 Identity:396/1055 - (37%)
Similarity:587/1055 - (55%) Gaps:96/1055 - (9%)


- Green bases have known domain annotations that are detailed below.


  Rat   238 IGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFE------DVPGVRRHLVRK-------- 288
            :.|.:|.::|  |:.|....|..|....:.| .:.||..      .|||.|||..|:        
  Fly    14 MNSSSGDDEA--PKDPRTGGEDFTQQFTEND-FEGHRAHTVYVGVHVPGGRRHSQRRRKHHHSGP 75

  Rat   289 -------------NAKGS----------TQAAREGREPGPTPRARPR---------APHKPHEVF 321
                         ...||          ::..:|...|...|..|.:         ..|..|.:|
  Fly    76 GGGGGGGGGGGSIGGSGSVGGGAGKDNVSEKQQEVERPVTPPAQRVQFILGEDVDDGTHVSHPLF 140

  Rat   322 VELNELQLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDL 386
            .|:..| :.:..|.:|:||||||||||||||...||.|||||:||..||.||||.|.:|:|:||:
  Fly   141 SEMGML-VKEGDEIEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRRLLVNGSVMLDM 204

  Rat   387 DQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSD-EKEFSFPRNISAGSLGSLLGH 450
            :.|.|..:|..|.:.||.:..:....:..|..|||.:|.|..: .|:...|   ...||..:..|
  Fly   205 EAQNLEVMADLVCDHMVSAGTLPPGVKDKVKDALLRRHRHQHEYAKKTRLP---IIRSLADMRNH 266

  Rat   451 HHAQGTESDPHVTEPL--IGGVPETRLEVDRERELPPPAPPAGITRSKSKHELKLLEKIPENAEA 513
            ..::..:|:...:.|.  :..:.|..::....:.:..|.....::..:.|.....:.|||..|||
  Fly   267 SSSKKKKSNSKHSRPAQNLSSITEDMVKSPSNQSMARPGSGTELSEQQHKGNTHFMRKIPPGAEA 331

  Rat   514 TVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMS 578
            :.:|||.|:||.|....|:||.:||.|..:.|||||.||:|:||||..:..::|||||:::||||
  Fly   332 SNILVGEVDFLERTLSCFIRLSQAVVLGDLTEVPVPTRFVFILLGPPGSQSNFHEIGRAMATLMS 396

  Rat   579 DKQFHEAAYLADERDDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPP 643
            |:.|||.||.|.:||.||:.::.|||...||||.|......:...|....|.::||       ||
  Fly   397 DEIFHEVAYRARKRDHLLSGVDEFLDAVTVLPPGEWDPTIRIEPPAAIPSQEVRKR-------PP 454

  Rat   644 GAGLEPKSAQDKALLQMVEVAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAA 708
            ..   ||...|    :..|.|...|::.|.||||.|||||.|::|:.|.|:||::|||..||:|:
  Fly   455 EL---PKEEVD----EEEEEARLREENGLSRTGRLFGGLINDIKRKAPWYISDYKDALSMQCVAS 512

  Rat   709 VIFIYFAALSPAITFGGLLGEKTQDLIGVSELIMSTALQGVIFCLLGAQPLLVIGFSGPLLVFEE 773
            .||:|||.|||.|||||||.|.|...:...|.::|..:.|:.:.....|||.::|.:||:||||.
  Fly   513 WIFLYFACLSPIITFGGLLAEATGKHMAAMESLVSGFVCGMGYGFFSGQPLTILGSTGPVLVFES 577

  Rat   774 AFFSFCKSNQLEYLVGRVWIGFWLVLLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFY 838
            ..:.||.....:|:..|.|||.|:..:.:::.|::.|.||.:::|||:|.||.||:.||||:...
  Fly   578 IIYEFCLKMGWDYMTFRFWIGMWVAGICIVLTAIDASALVCYITRFTEENFATLIAFIFIYKAIE 642

  Rat   839 KLIKIFQEHP----LHGCSV-----SNDSEADSSSNNMTWAATTLAPDNSSASGQERPRGQP--- 891
            .::.|.:..|    ::.|..     ||.|..|.:..|  |  .:....|.:..|.:  .|.|   
  Fly   643 NVMVIGKNFPVNQGIYDCVCTPPIGSNASVIDYAKYN--W--DSCESYNGTLVGGD--CGTPPTE 701

  Rat   892 NTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLS 956
            |..|:|:||.||||.|:..|::|||:.|||..:|:.|.||.|.|||..|...|||: ...||||.
  Fly   702 NVFLMSVVLCAGTFLISTVLKEFKNALFFPSIVRQYISDFSVLIAIFAMSFFDYSL-GVPTQKLE 765

  Rat   957 VPSGFSVTAPDKRGWVINPLGEKTPFPVWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQK 1021
            ||:....|. ..|||:|.|..||.|:  |..:.::.||:|..|||||:.|||.:|:::||..|:|
  Fly   766 VPNELKPTL-STRGWLIPPFVEKNPW--WSAIIAVFPALLGTILIFMDQQITAVIVNRKENKLKK 827

  Rat  1022 GSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTG 1086
            |.|:||||.::..:..||::.||||..||||.|:.|.|:|.:.|:..|||:||:...|:|||||.
  Fly   828 GCGYHLDLFILSILIAICSMMGLPWFVAATVLSINHVNSLKLESECSAPGEKPQFLGVREQRVTH 892

  Rat  1087 LLVALLVGLSMVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKV 1151
            :|:.|.:|:|:::..||..||:.||||:||||||.||.|:||::|:.::.||.|:.||..::::|
  Fly   893 ILIFLTIGVSVLLTPLLGNIPMPVLFGVFLYMGVASLKGLQFFDRILIMFMPAKYQPDYMFLRQV 957

  Rat  1152 RTMRMHLFTALQLLCLALLWAVMS-TAASLAFPFILILTVPLRMVVLTRIFTEREMKCLDANEAE 1215
            ...|:||||.:||.||.:||.:.| :..|:.||.:|::.:.:|. .|..:||.||:|.||  :..
  Fly   958 PIKRVHLFTMIQLACLIILWLIKSFSQTSILFPLMLVVMIGIRK-ALDLVFTRRELKILD--DIM 1019

  Rat  1216 PVFDECEGVDEYNEM 1230
            |...:....|:.:::
  Fly  1020 PEMTKRAAADDLHKL 1034

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity