DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptgs1 and cd

DIOPT Version :9

Sequence 1:NP_058739.4 Gene:Ptgs1 / 24693 RGDID:3439 Length:602 Species:Rattus norvegicus
Sequence 2:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster


Alignment Length:698 Identity:136/698 - (19%)
Similarity:224/698 - (32%) Gaps:257/698 - (36%)


- Green bases have known domain annotations that are detailed below.


  Rat    80 LRSSLRP----SPSFTHF-----------LLTHGYWIWEFVNATFIREVLMRLVLTV---RSNL- 125
            |...|:|    :|||.|:           |...||     |......::..|...|.   |||: 
  Fly   136 LEEGLQPNEVNTPSFRHYRSLSTNPEARKLARRGY-----VENQATIDIAKRFNYTKQPGRSNIG 195

  Rat   126 ------IPSPP--------------------------TYN---------TAHDYISWESFSNVSY 149
                  :|.|.                          ||.         .:.||....:...||:
  Fly   196 WGPKIVLPDPTVLRLECDFNARYRRSTGVCNNKQHPRTYGASMVPYRRMVSPDYADGIAAPRVSH 260

  Rat   150 YTRILPSVPKDCPTPMGTKGKKQLPDIHLLAQRLLLRREFIPAPQGTNVLFAFFAQHFTHQFFKT 214
            :.|:.|:              :|:        .|.:.|..........|:.|.|.|...|....|
  Fly   261 HGRLPPA--------------RQV--------SLKIHRSSYETDSNFTVMLAVFGQFMDHDITAT 303

  Rat   215 S------------------------------------------------------GKMGP--GFT 223
            |                                                      |:.||  ...
  Fly   304 SLTTSQEGESIDCCVAATREQHPECYPVDILPDDPYYKQYNISCMNFVRSAPAPTGRFGPRMQLN 368

  Rat   224 KALGHGVDLGHIYGDSLERQYHLRLFKDGKLKYQVLDG--EVYPPSVEQASVLMRYPPGVPPEKQ 286
            :|... :|...:||:..:||..||.|.:|.|:..|.|.  ::.|.|...|.       |....:.
  Fly   369 QATAF-IDASVVYGNLEQRQNQLRSFINGSLRMFVTDDGRQLLPISSNPAD-------GCNRVQM 425

  Rat   287 MAVGQEVFG----------LLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGE 341
            ..:|:..|.          ||..:.|   :|.|.||.:...|:|::|.|:||:|:|..|.||..:
  Fly   426 TRLGKYCFESGDDRANENLLLTSMHL---LWARHHNYLARQLQEQNPHWEDERLYQEARKILGAQ 487

  Rat   342 TIKIIIEEYVQHLSGY-------FLQLK--------FDPEL-------LFRAQFQYRNRIALEFN 384
            ...|...|::..|.|.       .|..|        :|||:       ...|.|::.        
  Fly   488 MAHITYNEFLPVLLGKNISEAKGLLPAKHNLNAPDTYDPEVDPSIANCFAAAAFRFA-------- 544

  Rat   385 HLYHWHPLMPDSFQVGSQEYSYE-----QFLFNT-SMLVDYGVE-ALVDA-----------FSRQ 431
                 |.|:|..|.:.....:.|     :.|||. |:..::|:: ||:.|           ||.:
  Fly   545 -----HTLLPGLFNISRDNSTPEAIELHKMLFNPFSLWAEHGIDHALMTAANTPVMQVDRFFSLE 604

  Rat   432 RAGRIGGGRNFDYHVLHVAED------------VIKESREMRLQSFNEYRKRFGLKPYTSFQEFT 484
            ...::..|         .|||            .|:..|:..:.|:..:|:...|....:::|.:
  Fly   605 VTQKLFEG---------TAEDRVPLCGLDLVSLNIQRGRDHGIPSYPVFRRHCRLPTVDTWEEMS 660

  Rat   485 GEKEMAA--ELEELYGDIDALEFYPGLMLEKCQPNSLFGESMIEMGAPFSLKGLLGNPICSPEYW 547
            ...:.|.  .:.::|.....::.|.|.:.|.....::||..:..|.:...|:..||:     .:|
  Fly   661 QAIDNATLDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCMVSDQFLRLKLGD-----SHW 720

  Rat   548 -----KPSTFGGDVGFNIVNTASLKKLVCLN----TKTCPYVSFRVPD 586
                 .|..|.......|..| ||..::|.|    |:...:|..|:.|
  Fly   721 YERKMGPQKFTKAQLAEIYKT-SLAAIICRNSDGITRVREHVMQRLRD 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptgs1NP_058739.4 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 127/672 (19%)
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 114/597 (19%)
peroxinectin_like 364..750 CDD:188655 92/424 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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