DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptgs1 and cysu

DIOPT Version :9

Sequence 1:NP_058739.4 Gene:Ptgs1 / 24693 RGDID:3439 Length:602 Species:Rattus norvegicus
Sequence 2:NP_650627.1 Gene:cysu / 42100 FlyBaseID:FBgn0038511 Length:753 Species:Drosophila melanogaster


Alignment Length:646 Identity:130/646 - (20%)
Similarity:213/646 - (32%) Gaps:238/646 - (36%)


- Green bases have known domain annotations that are detailed below.


  Rat   102 WEFVNATFIREVLMRLVLTVRSNLIPSPPTYNTA-------------------HDY------ISW 141
            |...||.|     .||:..:.|:.|.:|....|.                   ||:      |:|
  Fly   170 WGAANAPF-----QRLIGPLYSDGINAPRISVTGRDLPFSRVVSRTMHPDDGFHDHAGTVMVIAW 229

  Rat   142 ESFSNVSYYTRILPSVPKD----------CPTPMGTK----GKKQLPDIHLLAQRLLLRREFIPA 192
            ..|.:..:   .|...|.|          |..|:..|    .:.::||.... .||.        
  Fly   230 GQFMDHDF---TLTGTPLDPINRNDPEECCKRPLHLKHPYCNEIRIPDDDYF-YRLF-------- 282

  Rat   193 PQGTNVLFAFFAQHF----------THQFFKTSGKMGPGFTKALGHGVDLGHIYG--DSLERQYH 245
                ||....|.:.|          :.|.|.|           |...:|...:||  :|..|:  
  Fly   283 ----NVKCIDFVRGFPSPRPGCKLGSRQQFNT-----------LTGVIDANTVYGVKESFARK-- 330

  Rat   246 LRLFKDGKLKYQVLDGEVYPPSVEQASV--LMRYPPGVP------PEKQM--------AVGQEVF 294
            ||....|.::..        |..::..:  |:.....:|      |.|.|        .|.:::.
  Fly   331 LRTGYGGLMRMN--------PVFQEYGLKDLLPLKLDIPDEGCTRPNKSMYCFEGGEIRVNEQLV 387

  Rat   295 GLLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGETIKIIIEEYVQHLSGYFL 359
                 |....|:..|||||:...|.:.:..||||.|||..|.|.|.....:...|::..|.|..:
  Fly   388 -----LTCMHTLMAREHNRLATALAQINKHWDDETLFQEARRINIAIVQHVTFNEFLPILLGKEV 447

  Rat   360 QLKF-----------------DPELL---FRAQFQYRNRIALEFNHLYHWHPLMPDSFQVGSQEY 404
            ..||                 :|.::   ..|.|::             .|.|:|.:.:..|:.:
  Fly   448 MEKFGLVLQKDGYWDGYDSTVNPGIIDSFAGAAFRF-------------GHSLLPTAVERWSKAH 499

  Rat   405 SY------------EQFLFNTSMLVDYGV-------EALVDAFSRQRAGRIGGGRNFDYHVLHVA 450
            .:            ...|:...:|.:|.:       :|:.|:.:::                 |.
  Fly   500 KFIASKRLSDLIRRPYDLYRAGVLDEYFMGLMNQVAQAMDDSITQE-----------------VT 547

  Rat   451 EDVIKESRE---MRLQSFNEYRKR-FGLKPYTSFQEFTGEKEMAAELEELYG------------- 498
            ..:.|:...   |.|.|||..|.| ||:..|..|::|.| ...:...:|:||             
  Fly   548 NHLFKKEGARFGMDLVSFNMQRGREFGIPGYMEFRKFCG-LPTSNTWDEMYGSMPNETVLRYGSI 611

  Rat   499 -----DIDALEFYPGLMLEKCQPNSLFGES---MIEMGAPFSLKGLLGNPICSPEYW-----KPS 550
                 |||   .:.|.:.||..|.|:.|.:   :|.....:..:|        ..:|     :||
  Fly   612 FEHPADID---LWSGGVSEKSLPGSMLGPTFACVIATQMSYLRRG--------DRFWYELPNQPS 665

  Rat   551 TFGGDVGFNIVNTASLKKLVCLNT---KTCPYVSFRVPDY------PGDDGSVFVRPSTEL 602
            :|..: ....:..|.|.:|:|.||   .|.......:||:      |...|.:   ||.:|
  Fly   666 SFTPE-QLQEIRKAKLSRLICDNTDLIDTVQIYPMVLPDHEINPRVPCKSGII---PSIDL 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptgs1NP_058739.4 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 123/614 (20%)
cysuNP_650627.1 An_peroxidase 155..692 CDD:281139 122/611 (20%)
peroxinectin_like 305..687 CDD:188655 91/450 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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