DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Obp56f and Obp28a

DIOPT Version :9

Sequence 1:NP_725926.1 Gene:Obp56f / 246668 FlyBaseID:FBgn0043533 Length:125 Species:Drosophila melanogaster
Sequence 2:NP_523505.1 Gene:Obp28a / 34031 FlyBaseID:FBgn0011283 Length:143 Species:Drosophila melanogaster


Alignment Length:131 Identity:26/131 - (19%)
Similarity:57/131 - (43%) Gaps:23/131 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VFLLFIFISAIWLQAFCMKSS-----EKIKACLKRQLGYTITENTKFDAKE--DSLQSKCFYHCL 60
            :.:..:.:.|..::||..|.:     |..::|:. ::|.|..:..:...|:  .:...||...|:
  Fly     7 ILVAIVLLGAALVRAFDEKEALAKLMESAESCMP-EVGATDADLQEMVKKQPASTYAGKCLRACV 70

  Fly    61 LEVKGVI-ANDAISSEQPRKVLEKKYGITDTDELEKA-------------EEKCHSIKASGKCEL 111
            ::..|:: ||..:.:|...: ..|:|...|..:|:.|             ::.|.:.:|.|.|..
  Fly    71 MKNIGILDANGKLDTEAGHE-KAKQYTGNDPAKLKIALEIGDTCAAITVPDDHCEAAEAYGTCFR 134

  Fly   112 G 112
            |
  Fly   135 G 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Obp56fNP_725926.1 PBP_GOBP <52..120 CDD:279703 17/75 (23%)
Obp28aNP_523505.1 PhBP 35..134 CDD:214783 20/100 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11857
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.