DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30495 and Rdh12

DIOPT Version :10

Sequence 1:NP_001260785.1 Gene:CG30495 / 246651 FlyBaseID:FBgn0050495 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001101507.1 Gene:Rdh12 / 314264 RGDID:1310462 Length:316 Species:Rattus norvegicus


Alignment Length:297 Identity:148/297 - (49%)
Similarity:189/297 - (63%) Gaps:18/297 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VRLYMQGGKFRKQTDETGKVAIVTGGNTGLGKETVMELARRGATVYMACRNKEKVERARREIVKE 92
            :|.:..||....:....|||.::||.|||:||||..|||||||.||:|||:..|.|.|..||..:
  Rat    22 IRKFFAGGVCTTKVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRAD 86

  Fly    93 TGNSNVFSRECDLSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGH 157
            |.||.|..|:.|||...|||.|||.|..|::.||||||||||...|:..|.:|||.|.||||:||
  Rat    87 TKNSQVLVRKLDLSDTKSIRTFAEGFLAEEKKLHILINNAGVMMCPYSKTVDGFETHFGVNHLGH 151

  Fly   158 FLLTNLLLGVLERSAPSRVVVVASRAHERGQIKVDDINSSDFYDEGVAYCQSKLANILFTRELAK 222
            ||||.||||.|:.|||:||:.::|.||..|:|:..|:.|...|..|.||..|||||:||||||||
  Rat   152 FLLTYLLLGRLKESAPARVINLSSVAHLGGKIRFHDLQSKKRYCSGFAYSHSKLANVLFTRELAK 216

  Fly   223 RLEGTGVTVNALNPGIADTEIARNMIFFQTKFAQYVVETILRPLLWAV----MKTPKNGAQTTLY 283
            ||:|||||...::||...:||.|:              :.|..|||.:    .|:|..||||:|:
  Rat   217 RLQGTGVTAYVVHPGCVLSEITRH--------------SFLMCLLWRLFSPFFKSPWQGAQTSLH 267

  Fly   284 AALDPDLERVSGQYFSDCALAPVAPAALDDQMAQWLW 320
            .||:..||.:||:|||||....|:|.|.:.:.|:.||
  Rat   268 CALEEGLEPLSGKYFSDCKRTWVSPRARNKKTAERLW 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30495NP_001260785.1 Rossmann-fold NAD(P)(+)-binding proteins 45..323 CDD:473865 145/280 (52%)
Rdh12NP_001101507.1 Rossmann-fold NAD(P)(+)-binding proteins 39..307 CDD:473865 145/280 (52%)

Return to query results.
Submit another query.