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Protein Alignment CG30495 and Cbr1

DIOPT Version :9

Sequence 1:	NP_001260785.1	Gene:	CG30495 / 246651	FlyBaseID:	FBgn0050495	Length:	331	Species:	Drosophila melanogaster
Sequence 2:	NP_062043.1	Gene:	Cbr1 / 29224	RGDID:	2286	Length:	277	Species:	Rattus norvegicus

Alignment Length:	299	Identity:	72/299 - (24%)
Similarity:	120/299 - (40%)	Gaps:	69/299 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 VAIVTGGNTGLGKETVMELARRG-ATVYMACRNKEKVERARREIVKETGNSNVFSRECDLSSLDS 110
            ||:|||.|.|:|...|.:|.|:. ..|.:..|::.:...|.:::..| |.|..| .:.|:.:..|
  Rat     7 VALVTGANKGIGFAIVRDLCRKFLGDVVLTARDESRGHEAVKQLQTE-GLSPRF-HQLDIDNPQS 69

  Fly   111 IRKFAENFKKEQRVLHILINNAGVFWE-----PHRLTKEGFEMHLGVNHIGHFLLTNLLLGVLER 170
            ||...:...:|...|::|:||||:.::     |..:..   |:.:..|..|...:...||.:::
  Rat    70 IRALRDFLLQEYGGLNVLVNNAGIAFKVVDPTPFHIQA---EVTMKTNFFGTQDVCKELLPIIK- 130

  Fly   171 SAPSRVVVVASRAHERG--------QIK------------------VDDINSSDFYDEG---VAY 206
             ...|||.|:|....|.        |.|                  ::|........||   .||
  Rat   131 -PQGRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMNKFIEDAKKGVHAKEGWPNSAY 194

  Fly   207 CQSKLANILFTRELAKRL----EGTGVTVNALNPGIADTEIARNMIFFQTKFAQYVVETILRPLL 267
            ..:|:...:.:|..|::|    ....:.:||..||...|::|..
  Rat   195 GVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTDMAGP--------------------- 238

  Fly   268 WAVMKTPKNGAQTTLY-AALDPDLERVSGQYFSDCALAP 305
             ...|:|:.||:|.:| |.|.|..|...||:..|..:.|
  Rat   239 -KATKSPEEGAETPVYLALLPPGAEGPHGQFVQDKKVEP 276

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.