DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment antr and crispld1

DIOPT Version :9

Sequence 1:	NP_001246284.1	Gene:	antr / 246647	FlyBaseID:	FBgn0050488	Length:	272	Species:	Drosophila melanogaster
Sequence 2:	XP_002937123.2	Gene:	crispld1 / 100490431	XenbaseID:	XB-GENE-989389	Length:	514	Species:	Xenopus tropicalis

Alignment Length:	237	Identity:	55/237 - (23%)
Similarity:	82/237 - (34%)	Gaps:	70/237 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    66 ILSRINMLRNYVASGVGNYSVAARMPTMGWDFELQRLADRQVRQC------------------DE 112
            ||...|.||..|      |..|:.|..|.||.||:|.|:.....|                  ..
Frog    65 ILDLHNKLRGEV------YPPASNMEFMIWDVELERSAEAWAETCLWEHGPADLLPVIGQNLGAH 123

  Fly   113 TGKFCANTDKYHYVA-TTEIRSKMGRTKSLKSAILDKLLPELFLDVMGCMMNSQKLVPVREGTCV 176
            .|::...|  ||..| ..|:|              |...|           ..|:..|.....|.
Frog   124 WGRYRPPT--YHVQAWYDEVR--------------DYTFP-----------YPQECDPYCPFRCS 161

  Fly   177 G----HYMPLIQDHGSRMGC------GLRVKGRDEKESNIILLCHFS-RASVNNLVPYEEGQIPA 230
            |    ||..|:....||:||      .:.|.|:...:: |.|:|::| :.:.....||:.|. |.
Frog   162 GPVCTHYTQLVWATSSRIGCAINLCHNMNVWGQIWPKA-IYLVCNYSPKGNWWGHAPYKHGH-PC 224

  Fly   231 GKCATGPSQMYQFLCSEDE-YVDANSMVVESNMPSSDQIQVD 271
            ..|.  ||  |...|.::. |.|.:.:......|..:..:::
Frog   225 SACP--PS--YGGGCKDNLCYKDGSDLHYPLPEPEEETNEIE 262

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
antr	NP_001246284.1	SCP_euk	63..213	CDD:240180	42/175 (24%)
crispld1	XP_002937123.2	CAP_CRISPLD1	62..207	CDD:349407	42/175 (24%)
		LCCL	304..388	CDD:128866
		LCCL	407..506	CDD:367672
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1528782at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920