DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment antr and glipr2

DIOPT Version :9

Sequence 1:NP_001246284.1 Gene:antr / 246647 FlyBaseID:FBgn0050488 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_001107504.1 Gene:glipr2 / 100135358 XenbaseID:XB-GENE-5758336 Length:441 Species:Xenopus tropicalis


Alignment Length:91 Identity:17/91 - (18%)
Similarity:34/91 - (37%) Gaps:11/91 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 GHYMPLIQDHGSRMGCGLRVKGRDEKESNIILLCHFS-RASVNNLVPYEEGQIPAGKCATGPSQM 240
            ||:..::......:|.||...|:    ..:|::..:: ..::.|...|....:|.|...|.... 
 Frog   212 GHFTQMVWKASKEVGVGLASSGK----GMLIVVAQYNPSGNITNPGFYGRNVLPRGSKVTDDGG- 271

  Fly   241 YQFLCSEDEYVDANSMVVESNMPSSD 266
                 .||.:|.:.|......:|..:
 Frog   272 -----DEDGFVKSPSSTAVLPIPEKE 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
antrNP_001246284.1 SCP_euk 63..213 CDD:240180 7/35 (20%)
glipr2NP_001107504.1 SCP <3..69 CDD:294090
SCP_GAPR-1_like 118..249 CDD:240182 7/40 (18%)
SCP_GAPR-1_like 295..426 CDD:240182
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.