DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30480 and abd-A

DIOPT Version :9

Sequence 1:NP_001260976.1 Gene:CG30480 / 246640 FlyBaseID:FBgn0050480 Length:920 Species:Drosophila melanogaster
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:204 Identity:38/204 - (18%)
Similarity:60/204 - (29%) Gaps:86/204 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TIVEERSVNETIETIATSSGSVQETIEIVNID---GSVAPKH--------------------RHH 45
            ||....:.|....:.:.||.|...:    |::   ||::|.|                    :||
  Fly    65 TIAGSNTSNTNNSSSSPSSSSNNNS----NLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHH 125

  Fly    46 ----------------HHHHRHHHH-----------HERQENVEVVATEEVILVENAPKSRKHHH 83
                            ||..:.|||           .::|.::..:|...|       .|..|.|
  Fly   126 PQVQQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAV-------ASHGHAH 183

  Fly    84 HKQRTSPPPPLPQTSPPFLTPTEEVGFNVVWEPQAFWNQPSPNPSTDLDLS-----QDNEVVDAV 143
            .:...:||.                    ....||..:..||:||.....|     .||....|.
  Fly   184 QQLLLTPPS--------------------AGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSAS 228

  Fly   144 ETMDTTSAS 152
            .:...::||
  Fly   229 ASASASAAS 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30480NP_001260976.1 PRK10263 <499..>757 CDD:236669
abd-ANP_732176.1 Homeobox 402..454 CDD:278475
Abdominal-A 456..478 CDD:289192
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439744
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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