DRSC/TRiP Functional Genomics Resources

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Protein Alignment ave and Samd12

DIOPT Version :9

Sequence 1:NP_725413.1 Gene:ave / 246638 FlyBaseID:FBgn0050476 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_001124034.1 Gene:Samd12 / 362910 RGDID:1561402 Length:91 Species:Rattus norvegicus


Alignment Length:82 Identity:32/82 - (39%)
Similarity:51/82 - (62%) Gaps:12/82 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VYLWTVSDVLKWYRRHC-GEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIV 86
            |||        |.::|| .:|..|.:.|.|||||||||||:||..|:||||.....|:.|.::::
  Rat    12 VYL--------WLKKHCPNQYHIYSESFKQHDITGRALLRLTDKKLERMGVAQENQRQHILQQVL 68

  Fly    87 KQRLKTDIMEIRDMERL 103
            :.:::.   |:|:::.|
  Rat    69 QLKVRE---EVRNLQLL 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aveNP_725413.1 SAM_aveugle-like 21..94 CDD:188909 29/71 (41%)
Samd12NP_001124034.1 SAM 12..71 CDD:197735 29/66 (44%)
SAM_superfamily 15..76 CDD:301707 26/63 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343385
Domainoid 1 1.000 72 1.000 Domainoid score I9132
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1479834at2759
OrthoFinder 1 1.000 - - FOG0002966
OrthoInspector 1 1.000 - - otm45406
orthoMCL 1 0.900 - - OOG6_108143
Panther 1 1.100 - - LDO PTHR20843
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2956
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.850

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