DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tdc2 and Csad

DIOPT Version :9

Sequence 1:NP_724489.1 Gene:Tdc2 / 246620 FlyBaseID:FBgn0050446 Length:637 Species:Drosophila melanogaster
Sequence 2:NP_068518.1 Gene:Csad / 60356 RGDID:621030 Length:493 Species:Rattus norvegicus


Alignment Length:426 Identity:120/426 - (28%)
Similarity:184/426 - (43%) Gaps:67/426 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KRGMEMVEYICNYLETLNERRVTPSVEPGYLRHLLPPEAPQEPEDWDQIMRDVEDKIMPGVTHWQ 72
            ::|....|.:|.:            .||..|:.||..|...:.|..::|:....     .|.|:.
  Rat    34 RKGTNASEKVCEW------------KEPEELKQLLDLELQSQGESRERILERCR-----AVIHYS 81

  Fly    73 ----HPRFHAYFPAGNSFPSILGDMLGDGIGCIGFSWAASPACTELETIVLDWLGKAIGLPDHFL 133
                ||||.....:|....::.|.::.:.:....:::..:|....:|..||..|...:|      
  Rat    82 VKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLKKLRALVG------ 140

  Fly   134 ALKEGSTGGGVIQTSASECVLVTMLAARAQALKRLKAQHPFVEEGHL--LSKLMAYCSKEAHSCV 196
                .:||.||.....|...:..:..||.|       ::|..::..|  |..|..:.|||.|..:
  Rat   141 ----WNTGDGVFCPGGSISNMYAINLARFQ-------RYPDCKQRGLRALPPLALFTSKECHYSI 194

  Fly   197 EKAAMICFVKL-----RILEPDDDASLRGQTIYEAMEED----ELQGLVPFFVSTTLGTTGSCAF 252
            .|.|  .|:.|     |:::.|:    ||:.|.|.:|..    |.:|.|||.||.|.|||...||
  Rat   195 TKGA--AFLGLGTDSVRVVKADE----RGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAF 253

  Fly   253 DNLPEIGKQLQRFPGVWLHVDAAYAGNSFICPELKPLLKGIEYADSFNTNPNKWLLTNFDCSTLW 317
            |.|..|....||. |:|||||||:.|:..:....:.||.||:.|||...||:|.|.....||.|.
  Rat   254 DPLDAIADVCQRH-GLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 317

  Fly   318 VRDRIRLTSALV-------VDPLYLKHGYSDAAIDYRHWGVPLSRRFRSLKLWFVLRSYGISGLQ 375
            :||    ||.|:       ...|:.:..:.:.|:|.....|...||...||||.:.::.|..||:
  Rat   318 LRD----TSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLE 378

  Fly   376 HYIRHHIKLAKRFEELVLKDKRFEICNQVKLGLVCF 411
            ..|.....|.:...|.:.|.:.||:..:.:...|||
  Rat   379 WRIDQAFALTRYLVEEIKKREGFELVMEPEFVNVCF 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tdc2NP_724489.1 Pyridoxal_deC 35..414 CDD:278699 116/399 (29%)
CsadNP_068518.1 DOPA_deC_like 89..489 CDD:99743 104/354 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.