DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tdc2 and gad1b

DIOPT Version :9

Sequence 1:NP_724489.1 Gene:Tdc2 / 246620 FlyBaseID:FBgn0050446 Length:637 Species:Drosophila melanogaster
Sequence 2:NP_919400.1 Gene:gad1b / 378441 ZFINID:ZDB-GENE-030909-3 Length:587 Species:Danio rerio


Alignment Length:527 Identity:125/527 - (23%)
Similarity:225/527 - (42%) Gaps:77/527 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DSTEF----------RKRG--------MEMVEYICNYLETLNERRVTPSVEPGYLRHLLPP---- 44
            |.|:|          .|.|        :|:||.:.||:....:|. |..::..:...||..    
Zfish    84 DETDFSNLFARDLLPAKNGEEPTIQFLLEVVEILTNYVRKTFDRS-TKVLDFHHPHQLLEGMEGF 147

  Fly    45 --EAPQEPEDWDQIMRDVEDKIMPGVTHWQHPRFHAYFPAGNSFPSILGDMLGDGIGCIGFSWAA 107
              |...:||..:||:.|..|.:..|| ...||||.....:|.....:.|:.|........|::..
Zfish   148 NLELSDQPESLEQILVDCRDTLKYGV-RTGHPRFFNQLSSGLDIIGLAGEWLTSTANTNMFTYEI 211

  Fly   108 SPACTELETIVLDWLGKAIGLPDHFLALKEGS---TGGGVIQTSASECVLVTMLAARAQALKRLK 169
            :|....:|.:.|..:.:.||.|:     .:|.   :.||.|..      :.:::.||.:....:|
Zfish   212 APVFVLMEQLTLKKMREIIGWPN-----GDGDALFSPGGAISN------MYSVMVARYKYFPEVK 265

  Fly   170 AQHPFVEEGHLLSKLMAYCSKEAHSCVEKA-AMICFVK--LRILEPDDDASLRGQTIYEAME--- 228
            .:..     ....:|:.:.|:.:|..::|| |::.|.|  :.:|:.|:    ||:.|...:|   
Zfish   266 TKGM-----SAAPRLVLFTSEHSHYSIKKAGAVLGFGKENVILLKTDE----RGRVIPADLEAKV 321

  Fly   229 -EDELQGLVPFFVSTTLGTTGSCAFDNLPEIGKQLQRFPGVWLHVDAAYAGNSFICPELKPLLKG 292
             :.:.:|.||.||:.|.|||...|||.:.:|....::: .:|||||.|:.|...:..:.:..|.|
Zfish   322 IDAKQKGYVPLFVNATAGTTVYGAFDPINDIADICEKY-NLWLHVDGAWGGGLLMSRKHRHKLSG 385

  Fly   293 IEYADSFNTNPNKWLLTNFDCSTLWVRDR--IRLTSALVVDPLYLKHGYSDAAIDYRHWGVPLSR 355
            ||.|:|...||:|.:.....||.:.||::  ::..:::....|:......|...|.....:...|
Zfish   386 IERANSVTWNPHKMMGVPLQCSAILVREKGILQGCNSMCAGYLFQPDKQYDVTYDTGDKAIQCGR 450

  Fly   356 RFRSLKLWFVLRSYGISGLQHYIRHHIKLAKRFEELVLKDKRFEIC--NQVKLGLVCF-----RL 413
            .....|.|.:.::.|..|.:.:|...::|::.....:...:.:|:.  .|.:...|||     .|
Zfish   451 HVDIFKFWLMWKAKGTIGFEQHIDRCLELSEYLYNKIKNREGYEMVFEGQPQHTNVCFWYIPPSL 515

  Fly   414 KG---SDKLNEKL-------LSIINESGKLHMVPASVGDRYIIRFCAVAQNA-TAEDIDYAWDII 467
            :|   .|:..|||       .:::.|.|...:.....||:.......|:.:| |..|||:..|.|
Zfish   516 RGMPNGDERREKLHRVAPKIKAMMMECGTTMVGYQPQGDKVNFFRMVVSNHAVTKSDIDFLIDEI 580

  Fly   468 VDFANEL 474
            .....:|
Zfish   581 ERLGQDL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tdc2NP_724489.1 Pyridoxal_deC 35..414 CDD:278699 94/403 (23%)
gad1bNP_919400.1 Pyridoxal_deC 137..511 CDD:278699 94/395 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578197
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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