DRSC/TRiP Functional Genomics Resources

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Protein Alignment tbrd-3 and brd3

DIOPT Version :9

Sequence 1:NP_726307.1 Gene:tbrd-3 / 246604 FlyBaseID:FBgn0050417 Length:268 Species:Drosophila melanogaster
Sequence 2:XP_012823998.1 Gene:brd3 / 733891 XenbaseID:XB-GENE-492565 Length:796 Species:Xenopus tropicalis


Alignment Length:358 Identity:100/358 - (27%)
Similarity:139/358 - (38%) Gaps:114/358 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDYHEIVREPMDLSTVRHRLNTGCYLSAADFAKD 81
            |..|:|.:.|..:...||.||:|:|.:.|.|||||:|::.|||||:|:.:::...|..|..||.|
 Frog   367 CDSILKEMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSSVKRKMDAREYADAQAFAAD 431

  Fly    82 IRLIFYNTYLYTNPDHLCYHMAKQLQIIFEEMYSQV--------------QLYICSSGSKVRAEE 132
            |||:|.|.|.|..|||....||::||.:||..::::              ...:..|.......|
 Frog   432 IRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPLDPPAPPTAAAPVVSKSTESSHTSE 496

  Fly   133 ESSSDESDSSSPEDE--------------------------VN---------------------- 149
            ||||| ||||..|:|                          ||                      
 Frog   497 ESSSD-SDSSDSEEERATRLAELQEQLKAVHEQLAALSQAPVNKPKKKKEKKEKEKKKKDKEKDK 560

  Fly   150 ---------GSEVSPSIMGA------PPSCTPTTECTPTP----------------------DWT 177
                     ..|....|..|      ||...||.:.:.|.                      ...
 Frog   561 EKDKEKHKVKMEEEKKIKAAQPAKPVPPKKAPTKKASSTTASATTIAAASNATANSKQPKKGGKQ 625

  Fly   178 PPATLETSEQQE---PFTTEEDLDLHAKIQQLDGEVLLHVIHFIQRMEGA--EYCNKELEFDICK 237
            ||:....||::|   |.|.:|...|...|.:|.||.|..|:|.||..|.:  :....|:|.|...
 Frog   626 PPSAAYDSEEEEESLPMTYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFET 690

  Fly   238 LKVHTKRGIRDYLAS-------KGF--TGKRVA 261
            ||..|.|.:..|:.|       |.|  :||:.|
 Frog   691 LKPTTLRELERYVKSCLQKKQRKPFSASGKKQA 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-3NP_726307.1 Bromo_Brdt_II_like 13..114 CDD:99930 44/96 (46%)
brd3XP_012823998.1 Bromo_Brdt_I_like 30..136 CDD:99929
Bromo_Brdt_II_like 363..464 CDD:99930 44/96 (46%)
BET 641..705 CDD:374956 22/63 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000322
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X197
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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