DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-3 and Brd8

DIOPT Version :9

Sequence 1:NP_726307.1 Gene:tbrd-3 / 246604 FlyBaseID:FBgn0050417 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster


Alignment Length:164 Identity:42/164 - (25%)
Similarity:64/164 - (39%) Gaps:52/164 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KQETERSSPEINACKVIIKRLFSSTYKNI-----AWVFYEPLDPQLLGLHDYH-----EIVREPM 58
            ::||..:|          |:||.|.|..:     |..|..|       .||.|     ::...||
  Fly   725 RRETRAAS----------KKLFLSIYAMLLDSKHAAPFKRP-------FHDEHAQRHADLCLRPM 772

  Fly    59 DLSTVRHRLNTGCYLSAADFAKDIRLIFYNTYLYTNPDHLCYHMAKQL-----QIIFEEMYSQ-- 116
            |..|::..:::|...|.::..:|:.|:.:|..:...| |...|...:|     |.|.|  :||  
  Fly   773 DFPTIKRNIDSGFIRSLSELHRDVLLMAHNVLVAYKP-HTAQHKTARLFVQDCQAIKE--FSQLP 834

  Fly   117 -VQLYIC--------------SSGSKVRAEEESS 135
             ||..|.              |||||.|:....|
  Fly   835 DVQAGITATPVSNTGSLRADKSSGSKARSGSRKS 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-3NP_726307.1 Bromo_Brdt_II_like 13..114 CDD:99930 27/115 (23%)
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408
PHA03249 402..>582 CDD:223023
Bromo_brd8_like 729..833 CDD:99939 29/123 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.