DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpi and Rpia

DIOPT Version :9

Sequence 1:NP_001246480.1 Gene:Rpi / 246599 FlyBaseID:FBgn0050410 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001102102.1 Gene:Rpia / 362383 RGDID:1311377 Length:303 Species:Rattus norvegicus


Alignment Length:235 Identity:142/235 - (60%)
Similarity:181/235 - (77%) Gaps:5/235 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DAAKKTAARTAVDQWVTEDTKILGIGSGSTVVYAVQRIAERVWKEGELTDLICVPSSYQARHLIL 71
            :.|||.|:.|||:..| ::.::||||||||:|:|||||||||.:|.  .||||:|:|:|||.|||
  Rat    72 EEAKKLASHTAVENHV-KNNQVLGIGSGSTIVHAVQRIAERVKQEN--LDLICIPTSFQARQLIL 133

  Fly    72 DYNLNLGDLDRNPNIDVAIDGADEVDRHMVLIKGGGGCLLQEKVVASCAKHFIVVADYTKNSIRL 136
            .|.|.|.|||::|.||:|||||||||..:.|||||||||.|||:||..|..|||:||:.|:|..|
  Rat   134 QYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNL 198

  Fly   137 GEQWCRGVPIEVAPMAYVPIKLHIEALFGGEASLRMAKVKAGPIVTDNGNFLLDWKFIANREYDW 201
            |::|.:|:||||.||||||:...:...||||..||||..||||:|||||||:|||||  :|.:.|
  Rat   199 GDRWHKGIPIEVIPMAYVPVSRAVTQKFGGEVELRMAVNKAGPVVTDNGNFILDWKF--DRVHKW 261

  Fly   202 DEVNRAITLIPGVLETGLFVNMAHKCYYGMANGSVKVQNK 241
            .|||.||.:.|||::||||:|||.:.|:||.:|||.|:.|
  Rat   262 GEVNTAIKMTPGVVDTGLFINMAERVYFGMQDGSVNVREK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpiNP_001246480.1 RPI_A 24..231 CDD:238692 127/206 (62%)
RpiaNP_001102102.1 RPI_A 74..291 CDD:238692 135/221 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352774
Domainoid 1 1.000 231 1.000 Domainoid score I2354
eggNOG 1 0.900 - - E1_COG0120
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6943
Inparanoid 1 1.050 285 1.000 Inparanoid score I2780
OMA 1 1.010 - - QHG60821
OrthoDB 1 1.010 - - D1074761at2759
OrthoFinder 1 1.000 - - FOG0002439
OrthoInspector 1 1.000 - - oto98362
orthoMCL 1 0.900 - - OOG6_101105
Panther 1 1.100 - - LDO PTHR11934
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1856
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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