DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpi and Rpia

DIOPT Version :9

Sequence 1:NP_001246480.1 Gene:Rpi / 246599 FlyBaseID:FBgn0050410 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_033101.2 Gene:Rpia / 19895 MGIID:103254 Length:303 Species:Mus musculus


Alignment Length:235 Identity:142/235 - (60%)
Similarity:181/235 - (77%) Gaps:5/235 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DAAKKTAARTAVDQWVTEDTKILGIGSGSTVVYAVQRIAERVWKEGELTDLICVPSSYQARHLIL 71
            :.|||.|:.|||:..| ::.::||||||||:|:|||||||||.:|.  .||||:|:|:|||.|||
Mouse    72 EEAKKLASHTAVENHV-KNNQVLGIGSGSTIVHAVQRIAERVKQEN--LDLICIPTSFQARQLIL 133

  Fly    72 DYNLNLGDLDRNPNIDVAIDGADEVDRHMVLIKGGGGCLLQEKVVASCAKHFIVVADYTKNSIRL 136
            .|.|.|.|||::|.||:|||||||||..:.|||||||||.|||:||..|..|||:||:.|:|..|
Mouse   134 QYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNL 198

  Fly   137 GEQWCRGVPIEVAPMAYVPIKLHIEALFGGEASLRMAKVKAGPIVTDNGNFLLDWKFIANREYDW 201
            |::|.:|:||||.||||||:...:...||||..||||..||||:|||||||:|||||  :|.:.|
Mouse   199 GDRWHKGIPIEVIPMAYVPVSRAVAQKFGGEVELRMAVNKAGPVVTDNGNFILDWKF--DRVHKW 261

  Fly   202 DEVNRAITLIPGVLETGLFVNMAHKCYYGMANGSVKVQNK 241
            .|||.||.:.|||::||||:|||.:.|:||.:|||.|:.|
Mouse   262 SEVNTAIKMTPGVVDTGLFINMAERVYFGMQDGSVNVREK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpiNP_001246480.1 RPI_A 24..231 CDD:238692 127/206 (62%)
RpiaNP_033101.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..75 0/2 (0%)
RPI_A 74..291 CDD:238692 135/221 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849161
Domainoid 1 1.000 232 1.000 Domainoid score I2415
eggNOG 1 0.900 - - E1_COG0120
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6943
Inparanoid 1 1.050 285 1.000 Inparanoid score I2837
Isobase 1 0.950 - 0 Normalized mean entropy S585
OMA 1 1.010 - - QHG60821
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002439
OrthoInspector 1 1.000 - - oto94859
orthoMCL 1 0.900 - - OOG6_101105
Panther 1 1.100 - - LDO PTHR11934
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1198
SonicParanoid 1 1.000 - - X1856
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

Return to query results.
Submit another query.