DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha1R and Psmb3

DIOPT Version :10

Sequence 1:NP_724616.1 Gene:Prosalpha1R / 246582 FlyBaseID:FBgn0050382 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_036101.1 Gene:Psmb3 / 26446 MGIID:1347014 Length:205 Species:Mus musculus


Alignment Length:215 Identity:39/215 - (18%)
Similarity:79/215 - (36%) Gaps:46/215 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VALKSGDCAVVATQKKV-TEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRY 103
            :|:|..:|..:|..::. .:..:|......:|.:...:...:.|...|.::..|:.::....:..
Mouse    12 MAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYEL 76

  Fly   104 KYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDP--AGY----FSG 162
            |.|.::....|...:|:                    :.|:...||  |.|:|  ||.    |..
Mouse    77 KEGRQIKPYTLMSMVAN--------------------LLYEKRFGP--YYTEPVIAGLDPKTFKP 119

  Fly   163 FKACSV---------------GAKTLEANSYLEKKYKPNLSEEKAIQ-LAISCLSSVLAIDFKPN 211
            | .||:               |..:.:.....|..::||:..|...: ::.:.|::|........
Mouse   120 F-ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGM 183

  Fly   212 GIEIGVVSKSDPTFRILDER 231
            |:.:.|:.|...|.|.|..|
Mouse   184 GVIVHVIEKDKITTRTLKAR 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha1RNP_724616.1 proteasome_alpha_type_6 8..218 CDD:239723 33/200 (17%)
Psmb3NP_036101.1 proteasome_beta_type_3 6..201 CDD:239728 37/211 (18%)

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