DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30382 and pbs-3

DIOPT Version :9

Sequence 1:NP_001163078.1 Gene:CG30382 / 246582 FlyBaseID:FBgn0050382 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_494913.1 Gene:pbs-3 / 173858 WormBaseID:WBGene00003949 Length:204 Species:Caenorhabditis elegans


Alignment Length:187 Identity:35/187 - (18%)
Similarity:69/187 - (36%) Gaps:46/187 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TTVALKSGDCAVVATQKKVTEK-NIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANF 101
            |.||:...:|..:|:..::.|: ..:......:.::|..:...:.|..:|:|:.::|..:.    
 Worm    10 TVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFR---- 70

  Fly   102 RYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVL--IAYDNEIG---------------- 148
              |..||:                .:|..::|...|.::  :||.:..|                
 Worm    71 --KNLYEL----------------RENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNK 117

  Fly   149 PSVYKTDPAGYFSG---FKACSVGAKTL--EANSYLEKKYKPNLSEEKAIQLAISCL 200
            |.:...|..|..|.   |.|...|.:.|  ...::..:..||:...|...|..:|||
 Worm   118 PYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCL 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30382NP_001163078.1 PRE1 7..243 CDD:223711 35/187 (19%)
proteasome_alpha_type_6 8..218 CDD:239723 35/187 (19%)
pbs-3NP_494913.1 PRE1 3..193 CDD:223711 35/187 (19%)
proteasome_beta_type_3 6..200 CDD:239728 35/187 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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