DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30379 and tmbim4

DIOPT Version :10

Sequence 1:NP_724626.2 Gene:CG30379 / 246578 FlyBaseID:FBgn0050379 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_001004879.1 Gene:tmbim4 / 448209 XenbaseID:XB-GENE-947555 Length:235 Species:Xenopus tropicalis


Alignment Length:212 Identity:68/212 - (32%)
Similarity:121/212 - (57%) Gaps:8/212 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 IRMGFVRKVFGILLAQLLFTLAVIAIFSYHQPTKDFMHENFLLVLVAMIVNIIVLSTIVCVENVR 145
            |||.|::||:.||..|:|.|....|:|.|.:..:.|:||:..|:|:::|.:   |.|::.:...|
 Frog    27 IRMDFLKKVYSILTTQILLTTLTAALFLYSKSIQTFVHESPALLLISVIGS---LGTVIALTIYR 88

  Fly   146 RRHPVNLICLALYTFTMSLLLGTASSQMDSNVVISAVAITTLLVIALSIYAVQTKYDYTAAGGVI 210
            ::|||||..|..:|...::.:.||.:..|..||:.|..:||.:.:.|:.:..|:|.|::..|..:
 Frog    89 QQHPVNLYLLLAFTAFEAVTVATAVTFYDVAVVLQAFILTTAVFLGLTAFTFQSKRDFSKFGAGL 153

  Fly   211 LTFVIILIVLSVCGVWMPDFVDSLPITCLCTFIGCFFLIADMQSIVGGNRSEQLDPEEYVFAALT 275
            .|.:.|||..|...::.......|.|......:.|.|:|.|...::     .:|.||||:.|::.
 Frog   154 FTGLWILIFASFLRLFFYSETVELLIAAAGALLFCGFIIFDTHLLM-----HKLSPEEYILASVN 213

  Fly   276 LYVDVVRIFIYILRILE 292
            ||:|::.:|:::||||:
 Frog   214 LYLDIINLFLHLLRILQ 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30379NP_724626.2 LFG_like 76..291 CDD:198410 66/209 (32%)
tmbim4NP_001004879.1 GAAP_like 2..233 CDD:198411 68/212 (32%)

Return to query results.
Submit another query.