DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha100-3 and Tcirg1

DIOPT Version :9

Sequence 1:NP_725837.1 Gene:Vha100-3 / 246543 FlyBaseID:FBgn0028669 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_954520.2 Gene:Tcirg1 / 293650 RGDID:735136 Length:834 Species:Rattus norvegicus


Alignment Length:917 Identity:312/917 - (34%)
Similarity:477/917 - (52%) Gaps:122/917 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SFFRSEDMDLCQLLLHTENAFDCLIEVGHHGAVQFNNVYDEDRLLNNLYSKKVTQCYELLRIVDS 77
            |.||||::.|.||||.|.:|::|:.::|..|.|:|.::.:........:..:|.:|.||    :.
  Rat     3 SMFRSEEVALVQLLLPTASAYNCVSQLGELGLVEFRDLNESVSAFQRRFVVEVRRCEEL----EK 63

  Fly    78 LHTYIVQLHVNEIFYPDVDR--------ENRL---KEKDLAKYSDSLKRIHVEASAVTEHYYRLD 131
            ..|::.:         :|.|        |..|   ..:||.:..:...|:..|...|..:...|.
  Rat    64 TFTFLRE---------EVQRAGLTLTPPEGTLPAPPPRDLLRIQEETDRLAQELRDVRGNQQALR 119

  Fly   132 SRRNRMMEHSFALNKANKYMVSDMGSELLYSESTVIGLVQDATTTSGAY-PAHLNYMIGCIRADK 195
            ::.:::..||..|.:::...::.:.:|...:|.|.:     .:.|.|.: ...:|::.|.:...|
  Rat   120 AQLHQLQLHSAVLGQSHAPPMAAVHTEGPTTERTPL-----LSATPGPHADLKVNFVAGAVEPCK 179

  Fly   196 FYSFELLLYRLCSFNLIIRFSEMPSPVYEYHYGYKPERVRKFAILMMASSTMIWPKVLKI--CAH 258
            ..:.|.||:|.|...||..|.|....:.:...| :|.....|.|.....  .|..||.||  |.|
  Rat   180 AAALERLLWRACRGFLIASFKETEGQLEDPVTG-EPATWMTFVISYWGE--QIGQKVRKITDCFH 241

  Fly   259 YHVNIYDCPSSASQREDKVK---ELSQEIVNVEKVLKEAELMRRQILEVAGRDLFII---RVNLR 317
            .||..|     ..|.|.:::   :|.|:...:::||.|.|   |.:.:|.||...::   :|.:|
  Rat   242 CHVFPY-----LEQEEARLRTLQQLQQQSQELQEVLGETE---RFLSQVLGRVQQLLPPGQVQIR 298

  Fly   318 KALKVYDLMNRLRLVGGVEVPRYLLAEVYIPSSDVPEVEVILRNASR---ISGGADNIDSSDEDE 379
            |...|:..:|:..:   ....:.|:|||:..:.|:|.|:..|::.|.   :|..|..|       
  Rat   299 KMKAVHLTLNQCSV---NTTHKCLIAEVWCATRDLPTVQQALQSGSSEEGVSAVAHRI------- 353

  Fly   380 MNDMKTMPNTTPYPIEADFQPLEDMSAGAILLKKNRLVNHMPPTYFRLNKFTRGFQNLIDAYGMA 444
                                |.:|                ||||..|.|:||..||.::||||:.
  Rat   354 --------------------PCQD----------------MPPTLIRTNRFTSSFQGIVDAYGVG 382

  Fly   445 DYKELNPAPYTIITFPFLFAVMFGDLGHGILLILFSSLMIWKHREIEKYQINATSENEILNILYA 509
            .|:|:||||||||||||||||||||:|||:|:.||:..|:.    .|......|::|||....:.
  Rat   383 RYREVNPAPYTIITFPFLFAVMFGDVGHGLLMFLFALAMVL----TENQPAVKTTQNEIWQTFFG 443

  Fly   510 GRYIILLMGVFSVYMGLVYNIVMAKGFNLFGSSWS--CRYNETTVYDPAFH----VTLDSSHPHF 568
            |||:.||||:||:|.|.:||...::...:|.|.||  ...|::...|....    :||:.:....
  Rat   444 GRYLPLLMGLFSIYTGFIYNECFSRATTIFPSGWSVAAMANQSGWSDEYLSQHPMLTLNPNITGV 508

  Fly   569 YSGHPYPLGMDPVWAVCGQDSITTTNSLKMKMAIVLGISQMMFGLGLAAANCVLMNRKADLILVV 633
            :.| |||.|:||:|:: ..:.::..||.||||:::||::.|.||:.|:..|.|...:...|:|..
  Rat   509 FLG-PYPFGIDPIWSL-ATNHLSFLNSFKMKMSVILGVTHMAFGVFLSIFNHVHFGQAHRLLLET 571

  Fly   634 IPQMIFMLCLFGYLVFLIFYKWMSYGGHKPAPYNAACAPSVLITFINMMLMKKEDPVENCLDYMY 698
            :|::||:|.|||||||||.|||:..     :..:|:.|||:||.||||.|. .::|....|   :
  Rat   572 VPELIFLLGLFGYLVFLIVYKWLYV-----SAASASSAPSILIHFINMFLF-SQNPTNRLL---F 627

  Fly   699 PNERMIEFALVGIAFCTIPILLAGKPIYLMRRRRKMQQERERDFKRMRRQTIAEMRSTMRYTDDD 763
            ..:.::::|||.:|..|:||||.|.|:||:|:..:...:|.....|....:...:.|....|.::
  Rat   628 HGQVVVQYALVVLALATVPILLLGTPLYLLRQHHRRNTQRRPTAGRQDEDSDKLLASPDASTLEN 692

  Fly   764 NSETSRQK---SVDNEEEHEMSEIWIHSGIHTIETVLGSVSHTASYLRLWALSLAHDQLSDVLWH 825
            :.....:|   |.|.|.|...|||::|..|||||..||.:|:||||||||||||||.|||:|||.
  Rat   693 SWSPDEEKAGSSGDEEAEFVPSEIFMHQAIHTIEFCLGCISNTASYLRLWALSLAHAQLSEVLWA 757

  Fly   826 MVLTKGFANTLPLYYGVPVLMATFFAWAILTVAILVMMEGLSAFLHTLRLHWVEFQSKFFGGAGE 890
            ||:..|......:.....||:..|.|:|:||||||::|||||||||.|||||||||:||:.|.|.
  Rat   758 MVMRIGLGMGREIGVASVVLVPVFAAFAVLTVAILLVMEGLSAFLHALRLHWVEFQNKFYSGTGY 822

  Fly   891 SFKAFNF 897
            ....|.|
  Rat   823 KLSPFAF 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha100-3NP_725837.1 V_ATPase_I 38..897 CDD:279793 298/890 (33%)
Tcirg1NP_954520.2 NtpI 27..829 CDD:224188 298/891 (33%)
V_ATPase_I 28..829 CDD:279793 298/890 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342348
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1269
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D164762at33208
OrthoFinder 1 1.000 - - FOG0000328
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100301
Panther 1 1.100 - - O PTHR11629
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.750

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