DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema6b

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_006244410.1 Gene:Sema6b / 84609 RGDID:69278 Length:957 Species:Rattus norvegicus


Alignment Length:637 Identity:204/637 - (32%)
Similarity:309/637 - (48%) Gaps:111/637 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NNALYVGAMDRIFRLNLR-NISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMN 194
            |..|::|..|.::::.|. :.|..:..:..|......|||..|..|||:|. ||||.::|:  :.
  Rat   145 NRTLFIGDRDNLYQVELEPSTSTELRYQRKLTWRSNPSDIDVCRMKGKQEG-ECRNFVKVL--LL 206

  Fly   195 FNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGL 259
            .:...|:|||:||.||    |.||.: :...|.:.....|:.:|||||...:.|::.:.      
  Rat   207 RDESTLFVCGSNAFNP----ICANYS-MDTLQLLGDNISGMARCPYDPKHANVALFSDG------ 260

  Fly   260 PALYAGTNAEFTKADSVIFRS--DLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGEFVYF 322
             .|:..|..:|...|:||:||  |...|          ||||:|||...:|.||.:.|.|..|||
  Rat   261 -MLFTATVTDFLAIDAVIYRSLGDRPTL----------RTVKHDSKWFKEPYFVHAVEWGSHVYF 314

  Fly   323 FFREHAVEYINCGKAVYSRVARVCKNDRGGK-YMISQNWATYLKARMNCSISSEFPFYFNEIQSV 386
            ||||.|:|:....|.|.||||||||||.||. .::.:.|.::||||:|||:..:..||||.:|:|
  Rat   315 FFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAV 379

  Fly   387 YKMPTDDTK--FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEP 449
            ..:.:...:  ..|.|:|.:|.:.|||||::|:..:.|.|:|:|:||.:..|.|.||...:||.|
  Rat   380 TGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRP 444

  Fly   450 RPGTC------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVI---LTKLVVDKIRI 505
            |||.|      :|.:..|||.:|||::.|||||:||. ..|:..:..|.:|   ||::.|| :..
  Rat   445 RPGCCAAPGMQYNASNALPDEILNFVKTHPLMDEAVP-SLGHSPWIVRTLIRHQLTRVAVD-VGA 507

  Fly   506 DKLNQEFLVYF-----------------VATTSGHIYKIVQFMHY-----GQRHSNLVDIFEASP 548
            .....:.:|:.                 |:.|:|....:.:|..|     |:..|       |..
  Rat   508 GPWGNQTIVFLGSEVGTVLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRSSS-------AGE 565

  Fly   549 HSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CV--SDPYCGWDKDVNAC---R 607
            ..:.:..:.|...:|.|..|....|.::.:|.| :.|..|.: |:  .||||||..| .:|   |
  Rat   566 WGQRLLSLELDAASGGLLAAFPRCVVRVPVARC-QLYSGCMKNCIGSQDPYCGWAPD-GSCIFLR 628

  Fly   608 PYQLGLL-QDVAN-ETSGICD-TSVLRKK--------------VTSSYGQTLHLSCFVKMPEVLR 655
            |...... |||:. .|||:.| |.:||..              ||||      ::.|| :..|:.
  Rat   629 PGTSATFEQDVSGASTSGLGDCTGLLRASLSDDRAGLVSVNLLVTSS------VAAFV-VGAVVS 686

  Fly   656 KKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNE-------GDGGR 700
            .....|:....|: |...|....:.|..:.|...:|:|:.       |.|||
  Rat   687 GFSVGWFVGLRER-RELARRKDKEAILAHGGSEAVLSVSRLGERRGTGTGGR 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 160/484 (33%)
PSI 583..>606 CDD:396154 10/25 (40%)
Ig 632..724 CDD:472250 19/90 (21%)
Ig strand B 642..646 CDD:409353 0/3 (0%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 1/3 (33%)
Ig strand F 700..705 CDD:409353 1/1 (100%)
Ig strand G 717..720 CDD:409353
Sema6bXP_006244410.1 Sema_6B 128..596 CDD:200528 160/484 (33%)
PSI 597..>626 CDD:396154 12/30 (40%)
PHA03247 <768..955 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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