DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and SEMA3B

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001276990.1 Gene:SEMA3B / 7869 HGNCID:10724 Length:754 Species:Homo sapiens


Alignment Length:665 Identity:199/665 - (29%)
Similarity:294/665 - (44%) Gaps:97/665 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 VQDFS-----CGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDIL- 170
            :|.||     |    |:...:||....|:|||.:.:..|||.|||    :|...:..|...:.. 
Human    44 LQTFSLERTCC----YQALLVDEERGRLFVGAENHVASLNLDNIS----KRAKKLAWPAPVEWRE 100

  Fly   171 NCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPG-IGL 233
            .|...||....||.|.::::..  :|...|..|||.|.:|. .:|...:....|..:..|| |..
Human   101 ECNWAGKDIGTECMNFVKLLHA--YNRTHLLACGTGAFHPTCAFVEVGHRAEEPVLRLDPGRIED 163

  Fly   234 GIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTV 298
            |.||.||||...:.:|.|..       .||:|..|:....|..||||      .|::.:  .||.
Human   164 GKGKSPYDPRHRAASVLVGE-------ELYSGVAADLMGRDFTIFRS------LGQRPS--LRTE 213

  Fly   299 KYDSKLLDKPNFVGSFEIGEF-------VYFFFREHAVEYINC-GKAVYSRVARVCKNDRGGKYM 355
            .:||:.|::|.||..|.|.|.       :||||||.|||.... |:...|||.::|:||.||:..
Human   214 PHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGGQRS 278

  Fly   356 ISQNWATYLKARMNCSISS-EFPFYFNEI-----QSVYKMPTDDTK---FYATFTTNTNGLIGSA 411
            :...|.|:||||:.||:.. |...:|:::     :.|:.:.:.|.:   .||.|:|:::...|||
Human   279 LVNKWTTFLKARLVCSVPGVEGDTHFDQLRPFPAEDVFLLSSRDHRTPLLYAVFSTSSSIFQGSA 343

  Fly   412 VCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDSVLNFI 469
            ||.|.:.|:..||.|.|..:......|:. ...:||.||||.|       .:.|...||.|:.|.
Human   344 VCVYSMNDVRRAFLGPFAHKEGPMHQWVS-YQGRVPYPRPGMCPSKTFGTFSSTKDFPDDVIQFA 407

  Fly   470 RKHPLMDKAVDHEFGNPVFFK--RDVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMH 532
            |.||||..:|....|.|:|.:  .:...|::..|  |:...:..:.|.|:.|..|.:.|::. :.
Human   408 RNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAAD--RVAAADGHYDVLFIGTDVGTVLKVIS-VP 469

  Fly   533 YGQRHSN---LVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--V 592
            .|.|.|.   |::.......|..:..|.:|.|...||||:...|.||.:..||.....|..|  .
Human   470 KGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRHQLYVASRSAVAQIALHRCAAHGRVCTECCLA 534

  Fly   593 SDPYCGWDKDVNACRPYQLGL-----LQDVAN-ETSGIC--DTS---VLRKKVTSSYGQTLHLSC 646
            .||||.||.  .||..:|...     .|||.| :.|.:|  |:|   :|..||....|.:..|.|
Human   535 RDPYCAWDG--VACTRFQPSAKRRFRRQDVRNGDPSTLCSGDSSRPALLEHKVFGVEGSSAFLEC 597

  Fly   647 FVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLLC 711
               .|..|:.:....:..:......:|  ...:..:....||:|..:...|.|.|        ||
Human   598 ---EPRSLQARVEWTFQRAGVTAHTQV--LAEERTERTARGLLLRRLRRRDSGVY--------LC 649

  Fly   712 S---YGVTVDAHRCS 723
            :   .|.|....|.|
Human   650 AAVEQGFTQPLRRLS 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 153/490 (31%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 20/95 (21%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 1/4 (25%)
Ig strand G 717..720 CDD:409353 0/2 (0%)
SEMA3BNP_001276990.1 Sema 46..521 CDD:472829 156/503 (31%)
PSI 520..>556 CDD:214655 13/37 (35%)
Ig 579..670 CDD:472250 21/99 (21%)
Ig strand B 593..597 CDD:409353 1/3 (33%)
Ig strand C 605..609 CDD:409353 0/3 (0%)
Ig strand E 632..636 CDD:409353 2/3 (67%)
Ig strand F 646..651 CDD:409353 3/12 (25%)
Ig strand G 663..666 CDD:409353 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 707..754
Blue background indicates that the domain is not in the aligned region.

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