DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and SEMA6A

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_006714726.1 Gene:SEMA6A / 57556 HGNCID:10738 Length:1052 Species:Homo sapiens


Alignment Length:707 Identity:223/707 - (31%)
Similarity:333/707 - (47%) Gaps:156/707 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NNALYVGAMDRIFRLNL--RNISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPM 193
            |..||:.|.|.|:.:::  .:..:..|.:. |..:...:|:..|..||| .|.||.|.|:|:  :
Human    65 NGTLYIAARDHIYTVDIDTSHTEEIYCSKK-LTWKSRQADVDTCRMKGK-HKDECHNFIKVL--L 125

  Fly   194 NFNGQKLYVCGTNAHNP--KDYVINANLTHLPRSQYVPGIG---LGIGKCPYDPADNSTAVYVEN 253
            ..|...|:||||||.||  ::|.::.          :...|   .|:.:||||....:.|::.:.
Human   126 KKNDDALFVCGTNAFNPSCRNYKMDT----------LEPFGDEFSGMARCPYDAKHANVALFADG 180

  Fly   254 GNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGE 318
                   .||:.|..:|...|:||:||        ..|:...||||:|||.|.:|.||.:.:.|:
Human   181 -------KLYSATVTDFLAIDAVIYRS--------LGESPTLRTVKHDSKWLKEPYFVQAVDYGD 230

  Fly   319 FVYFFFREHAVEYINCGKAVYSRVARVCKNDRGG-KYMISQNWATYLKARMNCSISSEFPFYFNE 382
            ::||||||.||||...||.|:.|||:|||||.|| :.::.:.|.::||||:|||:..:..||||.
Human   231 YIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNI 295

  Fly   383 IQSVYKMPTDDTKF------YATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPV 441
            :|:|    ||..:.      .|||:|..|.:.|||||:||:.||.:.|.|:||||.:.:|.|.||
Human   296 LQAV----TDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIASVFTGRFKEQKSPDSTWTPV 356

  Fly   442 LNSKVPEPRPGTCHNDTA--------TLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVI---L 495
            .:.:||:||||.|...::        ..||..||||:.|||||:||...|..| :|.|.::   |
Human   357 PDERVPKPRPGCCAGSSSLERYATSNEFPDDTLNFIKTHPLMDEAVPSIFNRP-WFLRTMVRYRL 420

  Fly   496 TKLVVDKIRIDKLNQEFLVYFVATTSGHIYK-IVQFMHYGQRHSNL----VDIFEASPHS----- 550
            ||:.||...  ...|...|.|:.:..|.|.| :.:..:.|..:.:|    :.::.:...|     
Human   421 TKIAVDTAA--GPYQNHTVVFLGSEKGIILKFLARIGNSGFLNDSLFLEEMSVYNSEKCSYDGVE 483

  Fly   551 -EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CVS--DPYCGWDKDVNACRPY-- 609
             :.|..|.|...:.|||||....|.::.:..| .|:..|.: |::  ||||||.|:..||...  
Human   484 DKRIMGMQLDRASSSLYVAFSTCVIKVPLGRC-ERHGKCKKTCIASRDPYCGWIKEGGACSHLSP 547

  Fly   610 --QLGLLQDV-ANETSGI--CDTSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRW--YH---- 663
              :|...||: ...|.|:  |..|.    |..:....|.:.|.|    ::.:..:.|  :|    
Human   548 NSRLTFEQDIERGNTDGLGDCHNSF----VALNEANILFIMCMV----IILQGWSFWSCWHSSSL 604

  Fly   664 -------HSTEKGRYEVRYTPTKYIDTNEGGLV--------------LLAV---NEGD--GGRYD 702
                   .||.:..||.|           ||::              |.||   |..|  |...:
Human   605 LPSTTTSDSTAQEGYESR-----------GGMLDWKHLLDSPDSTDPLGAVSSHNHQDKKGVIRE 658

  Fly   703 SYLDG-------TLLC------------SYGVTVDA---HRCSPPSQKQDYQKIYSH 737
            |||.|       |||.            ..|:||..   ||....:..|..:|..:|
Human   659 SYLKGHDQLVPVTLLAIAVILAFVMGAVFSGITVYCVCDHRRKDVAVVQRKEKELTH 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 169/483 (35%)
Ig 632..720 CDD:299845 29/141 (21%)
SEMA6AXP_006714726.1 Sema_6A 48..513 CDD:200527 169/483 (35%)
PSI 514..>544 CDD:307546 13/30 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.910

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