DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and sema4ba

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001121824.1 Gene:sema4ba / 572261 ZFINID:ZDB-GENE-070705-31 Length:830 Species:Danio rerio


Alignment Length:769 Identity:222/769 - (28%)
Similarity:353/769 - (45%) Gaps:161/769 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGS-DILNCVSKGKREKV 181
            |..:|.:..:.:.:|.|||||.:.:|.||:.:||::..:|::....|... |  .|..|||..|.
Zfish    52 GVFNYTSLLLSKEDNMLYVGARETLFALNISDISRTQMQRNLTWSTPQRKRD--ECSFKGKDLKT 114

  Fly   182 ECRNHIRVIQPMNFNGQKLYVCGTNAHNP-KDYVINANLTH--LPRSQYVPGIGL-----GIGKC 238
            :|.|:|:::  :..|...||||||.|.:| ..|:::.|.::  |.|::    :|.     |..:|
Zfish   115 DCFNYIKIL--LRVNSTHLYVCGTYAFSPICTYIVSTNTSNFSLVRNE----VGEIMTEDGRSRC 173

  Fly   239 PYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSK 303
            ||:|...|||:..:.       .|||||.:.|...|.:|::|    |..|       ..:|.::.
Zfish   174 PYNPEYKSTAIMADG-------ELYAGTVSNFQGNDPIIYKS----LGQG-------TALKTENS 220

  Fly   304 L--LDKPNFVGSFEIGEF------------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKY 354
            |  |..|.||||..|.|.            :||||.|...|:......:.||:|||||.|:||:.
Zfish   221 LNWLQDPAFVGSAYIQESLPKGNAVGDDDKIYFFFSEAGKEFDFFDNTIVSRIARVCKGDKGGER 285

  Fly   355 MISQNWATYLKARMNCSISSE-FPFYFNEIQSVYKM-PTDD----TKFYATFTTN-TNGLIG-SA 411
            ::.:.|.|:|||::.||:..: ||  ||.||.::.: |:.:    |.||..||:. ..|..| ||
Zfish   286 VLQKKWTTFLKAQLLCSLPDDGFP--FNIIQDMFVLTPSKEDWKKTMFYGVFTSQWYKGASGSSA 348

  Fly   412 VCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTAT---------LPDSVLN 467
            ||::.:..:..||:|:::|.......|. ..|..|||||||.|..:||.         :||.|||
Zfish   349 VCAFTMDQVEEAFNGRYREVNRETQQWY-TYNHPVPEPRPGACITNTARAQGISSSLHMPDRVLN 412

  Fly   468 FIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMH 532
            |::.|.|||..:..:   |:..||:|..|:|.|.  |:..|::.:.|.|:.|..|.|:|.:...:
Zfish   413 FVKDHFLMDNVIRSQ---PLLLKRNVRYTQLAVH--RVQALHKTYDVLFIGTDDGRIHKAINVKN 472

  Fly   533 YGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDP 595
            .......|| ||   |..:.::.:.|..:.|.|:|::...:.:|.:|.|: .|.||..||  .||
Zfish   473 KMYIIEELV-IF---PEPQSVQHIELDDEKGLLFVSSYSGLVEIPLANCS-NYQSCGECVLSRDP 532

  Fly   596 YCGWD-------KDVNACRPYQLGLLQDVANETSGICDTSVLRK---KVTSSYGQTLHLSCFVKM 650
            ||.|.       |..::...:|    |||.:..:.||.....|.   :|.:.:...:..:.|..:
Zfish   533 YCAWTGKQCSNVKHASSKSQWQ----QDVEDANTAICKMPSPRSGRPRVPACHVVEIPANTFTVL 593

  Fly   651 PEVLRKK--QTRW-YHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYL----DGT 708
            |..||..  ..|| |..:.|:..|          .:.:||||::|..:    |.::|.    :|.
Zfish   594 PCKLRSNLAARRWEYSDTAERFVY----------PSPDGGLVVVAQVD----RQENYACWSEEGN 644

  Fly   709 ---LLCSYGVTVDAHRCSP-----------------PSQKQDYQKIYSHWCNE------------ 741
               ||.||.|..: |..:.                 |.:....||..::| ||            
Zfish   645 YRQLLASYCVKAE-HESTTLTGRSRTQQVTQGETILPGETWSPQKTKTYW-NELIVVCALLVFSL 707

  Fly   742 -----FEKYKS--AMKQWQAKQEQC-GLKDKTGPISSNGKHVNDVFSNDALVXP 787
                 |..|::  .||. ..|:.:| .::.|...|.  |||...:..|...: |
Zfish   708 VVLSLFVAYRNRDRMKS-MLKEGECPNMQQKKPRIP--GKHTESLPLNGNNIPP 758

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 158/498 (32%)
Ig 632..720 CDD:299845 23/100 (23%)
sema4baNP_001121824.1 Sema_4B 47..515 CDD:200518 159/500 (32%)
PSI 516..565 CDD:214655 16/53 (30%)
Ig 578..654 CDD:299845 21/89 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.