DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and SEMA3G

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_024309410.1 Gene:SEMA3G / 56920 HGNCID:30400 Length:800 Species:Homo sapiens


Alignment Length:640 Identity:191/640 - (29%)
Similarity:282/640 - (44%) Gaps:96/640 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILNCVSKGKREKVE 182
            |.|:.:..|:||..:.|::|.:|.::.|.|   .|:..:...::..|.......||.||:....|
Human    72 GSLNLQAMYLDEYRDRLFLGGLDALYSLRL---DQAWPDPREVLWPPQPGQREECVRKGRDPLTE 133

  Fly   183 CRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYV----PG-IGLGIGKCPYDP 242
            |.|.:||:||  .|...|..|||.|..|...:|...  |  |.::|    || :..|.|:||::|
Human   134 CANFVRVLQP--HNRTHLLACGTGAFQPTCALITVG--H--RGEHVLHLEPGSVESGRGRCPHEP 192

  Fly   243 ADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDS--KLL 305
            :....:.:::.       .||.|..|:|...:::||||      .|.:.|     ::.||  .||
Human   193 SRPFASTFIDG-------ELYTGLTADFLGREAMIFRS------GGPRPA-----LRSDSDQSLL 239

  Fly   306 DKPNFVGSFEIGE-------FVYFFFREHAVEYINCGK--AVYSRVARVCKNDRGGKYMISQNWA 361
            ..|.||.:..|.|       .|||||.| .|...:.|.  ...|||.|||.||.||:.::...|:
Human   240 HDPRFVMAARIPENSDQDNDKVYFFFSE-TVPSPDGGSNHVTVSRVGRVCVNDAGGQRVLVNKWS 303

  Fly   362 TYLKARMNCSISSE--FPFYFNEIQSVYKM---PTDDTKFYATFTTNTNGLIGSAVCSYDIRDIN 421
            |:||||:.||:...  ...:|::::.|:.:   .....:.||.|:|.:....|.|||.|.:.||.
Human   304 TFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMADIW 368

  Fly   422 AAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC-----------HNDTATLPDSVLNFIRKHPLM 475
            ..|:|.|..:......|.| ...|||.||||.|           ...|...||.||.|.|.||||
Human   369 EVFNGPFAHRDGPQHQWGP-YGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFARAHPLM 432

  Fly   476 DKAVDHEFGNPVFFKRDVI--LTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHS 538
            ...|....|.||..|..:.  |.::|||  |::..:..:.|.|:.|.||.:.|::.....|....
Human   433 FWPVRPRHGRPVLVKTHLAQQLHQIVVD--RVEAEDGTYDVIFLGTDSGSVLKVIALQAGGSAEP 495

  Fly   539 NLVDIFEASPHS--EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGW 599
            ..|.:.|.....  .||.||.:|.|...|||.:...|.|:.:..|.....:|..|  ..||||.|
Human   496 EEVVLEELQVFKVPTPITEMEISVKRQMLYVGSRLGVAQLRLHQCETYGTACAECCLARDPYCAW 560

  Fly   600 DKDVNACRPYQLGL------LQDVANETSGI-C------DTSVLRKKVTSSYGQTLH----LSCF 647
            |.  .:|..|:..|      .||:.:....: |      :.:|.....|..|| |.|    |.|.
Human   561 DG--ASCTHYRPSLGKRRFRRQDIRHGNPALQCLGQSQEEEAVGLVAATMVYG-TEHNSTFLECL 622

  Fly   648 VKMPEVLRKKQTRW-YHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRY 701
            .|.|:.    ..|| .....::|..:|: |..:.:.| |.||:...::..|.|.|
Human   623 PKSPQA----AVRWLLQRPGDEGPDQVK-TDERVLHT-ERGLLFRRLSRFDAGTY 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 153/494 (31%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 21/75 (28%)
Ig strand B 642..646 CDD:409353 2/7 (29%)
Ig strand C 658..662 CDD:409353 2/4 (50%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 1/2 (50%)
Ig strand G 717..720 CDD:409353
SEMA3GXP_024309410.1 Sema_3G 67..540 CDD:200516 154/498 (31%)
PSI 539..585 CDD:214655 14/47 (30%)
Ig_Sema3 604..694 CDD:409455 21/75 (28%)
Ig strand A 604..609 CDD:409455 1/4 (25%)
Ig strand B 614..622 CDD:409455 2/7 (29%)
Ig strand C 628..634 CDD:409455 2/9 (22%)
Ig strand C' 636..639 CDD:409455 0/2 (0%)
Ig strand D 649..653 CDD:409455 0/3 (0%)
Ig strand E 656..663 CDD:409455 2/6 (33%)
Ig strand F 669..678 CDD:409455 2/3 (67%)
Ig strand G 681..694 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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