DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema3b

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001121818.1 Gene:sema3b / 567064 ZFINID:ZDB-GENE-081105-78 Length:775 Species:Danio rerio


Alignment Length:743 Identity:216/743 - (29%)
Similarity:330/743 - (44%) Gaps:146/743 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 CCT--------------GSS-AAHHLRHHKEHVQDF----------SCGPLHYKTFYMDERNNAL 134
            |||              ||| ::..::...:.:|.|          ||.   :....:||....|
Zfish     6 CCTLVLFGLIGISASLSGSSQSSPRMKLSYKDLQQFNGIKRFDLERSCS---FGALLLDEERGRL 67

  Fly   135 YVGAMDRIFRLNLRNISQSICERDVLILEPTGSDIL-NCVSKGKREKVECRNHIRVIQPMNFNGQ 198
            :|||.:.:..|:|.|||    :::..|..|...|.. .|...||....:|.|:::|:.  ::|..
Zfish    68 FVGARNFLLSLSLDNIS----KQEQKIYWPAPVDWREECNWAGKDINTDCVNYVKVLH--HYNRT 126

  Fly   199 KLYVCGTNAHNP-----------KDYV--INANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVY 250
            .||.|||.|.:|           :|:|  |:.:|           :..|.||.||||...|.:|.
Zfish   127 HLYACGTGAFHPTCAYVEVGQKMEDHVFRIDPSL-----------VEDGKGKSPYDPRHTSASVL 180

  Fly   251 VENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFE 315
            :.:       .||||...:....|..||||      .|:|.:  .||.::||:.|::|.|:.:|.
Zfish   181 IGD-------ELYAGVATDLMGRDFTIFRS------MGQKPS--IRTEQHDSRWLNEPKFIAAFG 230

  Fly   316 IGEF-------VYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSI- 372
            :.|.       |:|||||.|||....||..|||:.::|:||.||:..:...|.|:||||:.||: 
Zfish   231 VPESDNPDDDKVFFFFRETAVEAQGFGKVTYSRIGQLCRNDMGGQRSLVNKWTTFLKARLVCSVP 295

  Fly   373 -SSEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQAT 433
             :.....:|:|::.|:.:.|.|.|   .|..|||:::...|||||.|.:.||..||.|.|..:..
Zfish   296 GNDGTETHFDELRDVFLLQTRDKKNPLIYTVFTTSSSVFQGSAVCLYTMNDIRRAFLGPFAHKEG 360

  Fly   434 SNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKR 491
            .|..|:| ...|||.||||.|       ...|...||:|:.|.|.||||...|....|.|:|.:.
Zfish   361 PNYQWIP-FQGKVPYPRPGMCPSKTFGSFESTKGFPDNVIQFARHHPLMFNPVTPLGGRPLFLRT 424

  Fly   492 DV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNL----VDIFEASPHS 550
            .:  ..|::.||  |::..:..:.|.|:.|..|.:.|::........::.|    :.:|:   .|
Zfish   425 GIPYTFTQITVD--RVNAADGHYDVMFIGTDVGSVLKVISVPKGSWSNTELLLEELHVFK---DS 484

  Fly   551 EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPY---- 609
            ..|..|.:|.|...|||.:|..|.|:.:..|:....:|..|  ..||||.||.  :.|..|    
Zfish   485 SSIISMQISSKRQQLYVGSDTGVVQVPLHRCSMYGKACAECCLARDPYCAWDG--HTCTRYLPNT 547

  Fly   610 -QLGLLQDVAN-ETSGICD-----TSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTE 667
             :....|||.| :.:.:|.     ..||.|::.:..|.:..|.|   :|:.|:.:.|..|....|
Zfish   548 KRRFRRQDVRNGDPNALCSGDHQKQRVLEKRLYAVDGSSSFLEC---VPKSLQAQITWTYQKLPE 609

  Fly   668 KGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSY-----LDGTLLCSYGVTVD--AHRCSPP 725
            ..|.||| ...:.:.|..|.|:..||.. |.|.|..:     ...|:|   .:|::  ....|.|
Zfish   610 NPREEVR-LDERVLQTERGLLLRRAVRR-DAGVYQCHSMEHGFTQTIL---AITLEILPSAGSAP 669

  Fly   726 SQKQDYQKIYSH-----------WCNEF 742
            |........:||           |..:|
Zfish   670 SAVNPRSPAHSHVSHGQSTNQKLWYRDF 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 157/497 (32%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 24/98 (24%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 1/3 (33%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 1/9 (11%)
Ig strand G 717..720 CDD:409353 0/4 (0%)
sema3bNP_001121818.1 Sema 46..515 CDD:472829 159/509 (31%)
PSI 514..>550 CDD:214655 11/37 (30%)
Ig_Sema3 574..664 CDD:409455 26/97 (27%)
Ig strand A 574..579 CDD:409455 3/4 (75%)
Ig strand B 584..592 CDD:409455 3/10 (30%)
Ig strand C 598..604 CDD:409455 1/5 (20%)
Ig strand C' 606..609 CDD:409455 0/2 (0%)
Ig strand D 619..623 CDD:409455 0/3 (0%)
Ig strand E 626..633 CDD:409455 2/6 (33%)
Ig strand F 639..648 CDD:409455 2/8 (25%)
Ig strand G 651..664 CDD:409455 3/15 (20%)

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