DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema3e

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001038549.1 Gene:sema3e / 565658 ZFINID:ZDB-GENE-030131-7864 Length:768 Species:Danio rerio


Alignment Length:735 Identity:200/735 - (27%)
Similarity:319/735 - (43%) Gaps:136/735 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILNCVSKGKREKVE 182
            |.|...|..:||....|.:|..|.::.|||..|:   .....::...:...:.:|:.:| |||.|
Zfish    51 GRLQQYTMLLDETQERLIIGGKDVLYSLNLERIT---APHKRIVWSSSQEQVEDCLMQG-REKPE 111

  Fly   183 CRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQY---VPGIGLGIGKCPYDPAD 244
            |.|:|:::|  ::|...|..|||.|.:|....|..:.......::   ...|..|.|:.|:.| :
Zfish   112 CANYIKLVQ--HYNSTHLLACGTGAFSPVCAYIRVSRGAEQEREFRLESDHIESGRGRVPFHP-N 173

  Fly   245 NSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPN 309
            :..|..|..|.      |:.|...::.:.|:.     ||.|.|    .:|.||...|.:.|::|.
Zfish   174 SPLASTVYRGE------LFVGLYTDYWENDAA-----LYRLGN----HSFIRTEVGDRQQLNEPK 223

  Fly   310 FVGSFEI-------GEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKAR 367
            ||||..|       .:.||:||.|...:.....||||:||||||.||:||:.|:...|:::||.|
Zfish   224 FVGSAVIPDNDDPADDKVYYFFTERVADVEGGNKAVYTRVARVCANDQGGQRMLVNRWSSFLKTR 288

  Fly   368 MNCSIS--SEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGK 427
            :.||::  :....:|:|::.|:.:...|.|   .:..|:|.:....|.|||.|::.||.|||:|.
Zfish   289 LICSVAGPNGIDTHFDELEDVFVLRKKDEKNPEIFGLFSTTSAVFKGYAVCMYNMDDIRAAFNGP 353

  Fly   428 FKEQATSNSAWLPVLNSKVPEPRPGTC--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFG 484
            |..:..::..| .|.:.|||.||||:|        .:.:....|.||.|.|.||||.:||.....
Zfish   354 FAHRERTDHHW-KVYDGKVPYPRPGSCASKINGGHFSSSKEYSDEVLRFARSHPLMFQAVQPVHR 417

  Fly   485 NPVFFKRD--VILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSN----LVDI 543
            .|:....:  ..||:|.||  |::..:..:.|.|:.|.:..:.|::..  |.:....    |::.
Zfish   418 RPILLDTEGGRKLTQLAVD--RVEAEDGHYNVLFIGTDNSVVLKMITI--YNKEADTVEEVLLEE 478

  Fly   544 FEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNAC 606
            .:......||.|:.:|.|...|||.::..|.||.:..|.....:|..|  ..||||.|| .....
Zfish   479 LQVFKVPVPITEILISTKRQQLYVGSELGVTQIRVHQCGLYGSACADCCLARDPYCAWD-GFTCS 542

  Fly   607 RPYQLGLL-------QDV-----ANETSGIC---DTSVLRKKVTSSYGQTLHLSCFVKMPEVLRK 656
            |.|..||.       |||     ..:.:|:.   :.|:..|.|......:..|.|   .|..|:.
Zfish   543 RYYPAGLYTKRRFRRQDVRHGNAVQQCNGLQLSEEQSISEKLVYGVENNSTLLEC---RPRSLQA 604

  Fly   657 KQTRWYHH--STEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRY--DSYLDGTLLCSYGVTV 717
            ..|.:..|  ..|:.:.:.|...|.:      ||:||.:.:.|.|.|  .|...|.:.....||:
Zfish   605 SVTWYIEHGLDMEEVKSDDRMIQTPH------GLLLLRIMKSDAGVYVCQSTEHGFIQTLLRVTL 663

  Fly   718 DA---------------------HRCSPP---------SQK---QDYQKI--YSH---------- 737
            :.                     ||.:||         |.|   :|:.::  ||:          
Zfish   664 EVLEEGKVEALLHKPEEEDSDLPHRAAPPCSFPSLPSTSSKLWYKDFMQLIGYSNFQRVEQYCEK 728

  Fly   738 -WC---NEFEKYKSAMKQWQ 753
             ||   .:.:|.|....:|:
Zfish   729 VWCVADRKRKKLKGMTPKWR 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 145/487 (30%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 24/116 (21%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 1/3 (33%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 2/6 (33%)
Ig strand G 717..720 CDD:409353 0/23 (0%)
sema3eNP_001038549.1 Sema_3E 46..516 CDD:200514 146/491 (30%)
PSI 515..563 CDD:214655 16/48 (33%)
Ig_Sema3 579..668 CDD:409455 23/97 (24%)
Ig strand A 579..585 CDD:409455 2/5 (40%)
Ig strand B 590..598 CDD:409455 2/10 (20%)
Ig strand C 604..610 CDD:409455 1/5 (20%)
Ig strand C' 612..615 CDD:409455 1/2 (50%)
Ig strand D 623..627 CDD:409455 1/3 (33%)
Ig strand E 630..637 CDD:409455 4/12 (33%)
Ig strand F 643..652 CDD:409455 3/8 (38%)
Ig strand G 655..668 CDD:409455 2/12 (17%)

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