DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and si:ch211-129c21.1

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_005170527.1 Gene:si:ch211-129c21.1 / 563087 ZFINID:ZDB-GENE-030131-5796 Length:791 Species:Danio rerio


Alignment Length:652 Identity:202/652 - (30%)
Similarity:306/652 - (46%) Gaps:99/652 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GSS-----AAHHLRHHKEHVQDF-SCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICE 156
            |||     |...:::...|...| ..|..:|.|..:.|....|.:||.:.:|.|::.:||.|   
Zfish    20 GSSSLDIIARKTIQYEDNHAITFKEQGIWNYSTMLIREDLGLLVLGAREAVFALDINDISVS--- 81

  Fly   157 RDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVI--NAN 218
            |..::.:.|......|.||||...::|.|:||::..|  |...:|:|||||.:|. ||:.  |..
Zfish    82 RSKVLWKVTEEKQKECTSKGKHPDIDCHNYIRMLHQM--NDSVMYICGTNAFSPTCDYITYDNGQ 144

  Fly   219 LTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLY 283
            |....:.:.      |.||||:||...|::|.|:..       ||:.|:..|..::.||.|:...
Zfish   145 LQLEGKQED------GRGKCPFDPFQRSSSVMVDQD-------LYSATSLNFLGSEPVILRTSPI 196

  Fly   284 NLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGEF----------VYFFFREHAVEYINCGKAV 338
            .|          ||: ..|..|::|||:....:.|.          :|.||.|:|:||....|.|
Zfish   197 TL----------RTL-LKSSWLNEPNFIYMDAVPESEDSPEGDDDKIYMFFSENAIEYDFYNKLV 250

  Fly   339 YSRVARVCKNDRGGKYMISQNWATYLKARMNCSI-SSEFPFYFNEIQSVYKMPTDDTKFYATFTT 402
            .||||||||.|.||...:.:.|.::||||::||: ....|:...::..|.......:.|||.||:
Zfish   251 VSRVARVCKGDMGGLRTLQRKWTSFLKARLDCSVPEPSLPYVIQDVFHVRHQKWRKSVFYAIFTS 315

  Fly   403 NTNGL-IGSAVCSYDIRDINAAFD-GKFKEQAT---SNSAWLPVLNSKVPEPRPGTCHNDTA--- 459
            .::.. ..||||:|::.||:..|. ||||.:..   |:..|: ..:..:|.||||.|.|:.|   
Zfish   316 QSSSTDQSSAVCAYNVTDISNVFSRGKFKTEVAVEMSDVKWV-TYSGDLPVPRPGDCINNAARTS 379

  Fly   460 ------TLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFLVYFVA 518
                  .:||..|.|||..||||.||....|.|:..||..:||:||||.:.... .|.:.:.||.
Zfish   380 GIKSSMNIPDKTLQFIRDRPLMDDAVHPITGKPLLLKRGPLLTRLVVDMVTAAD-GQSYPMMFVG 443

  Fly   519 TTSGHIYKIVQF---MHYGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAM 580
            |.:|::.|.|.:   ||..:.    |.:||    ||...::...|: ..||..:...|.|:.::.
Zfish   444 TANGYVQKAVNYDGEMHIIEE----VKLFE----SEEAIDVLRLHQ-NQLYAGSASGVVQMPVSN 499

  Fly   581 CARRYDSCFRCV--SDPYCGWDKDVNACRPY-------QLGLLQDVANETSGICD-TSVLRKKV- 634
            |: ||.||..||  .||||.||.....|..:       :..|:|.:.:..:..|. |:.:..|| 
Zfish   500 CS-RYSSCLDCVLARDPYCAWDVPAQRCSRFPASTEHAKSNLIQSLKDGDATQCPITAPIEPKVR 563

  Fly   635 TSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGG 699
            |...|..:.|.|   .|: ....|..|    ...|: .:.::..||...|:..|:..| :..|.|
Zfish   564 TLVLGNNIRLLC---RPD-SNLAQVNW----NLAGK-PLPFSNRKYTIYNDAILISNA-SSADAG 618

  Fly   700 RY 701
            ||
Zfish   619 RY 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 158/489 (32%)
Ig 632..720 CDD:299845 19/71 (27%)
si:ch211-129c21.1XP_005170527.1 Sema_4E 42..498 CDD:200521 160/495 (32%)
PSI 499..553 CDD:214655 16/54 (30%)
Ig_Sema4D_like 558..644 CDD:143281 19/73 (26%)
IG_like 560..623 CDD:214653 19/71 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H88611
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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