DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and sema4c

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001121718.1 Gene:sema4c / 561895 ZFINID:ZDB-GENE-080303-16 Length:863 Species:Danio rerio


Alignment Length:684 Identity:209/684 - (30%)
Similarity:305/684 - (44%) Gaps:129/684 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILNCVSKGKREKVE 182
            |..:|....:.|....|||||.:.||.|:..:||:.:  |..:...........|.:|||..:.|
Zfish    47 GVWNYTMLTLAEHERVLYVGARENIFALDPNDISRQL--RPQIEWSAPAEKKKECAAKGKNNQTE 109

  Fly   183 CRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNST 247
            |.|:||.:|  ::|...||.|||.|..||...|||:...|..:    .:..|.||||||||...|
Zfish   110 CFNYIRFLQ--SYNHTHLYTCGTYAFQPKCTYINADHFTLDSA----ALEDGKGKCPYDPAKGHT 168

  Fly   248 AVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVG 312
            .:.|:.       .||:.|...|...:.||.|    ||  |::..:.|.  :|....|::|||||
Zfish   169 GLIVDK-------ELYSATLNNFLGTEPVILR----NL--GQQHYSMKS--EYLPAWLNEPNFVG 218

  Fly   313 SFEIGEF----------VYFFFREHAVEYINC-GKAVYSRVARVCKNDRGGKYMISQNWATYLKA 366
            |..:.|.          :||||.|.||| ::| .....:|||||||.|.||...:.:.|.|:.||
Zfish   219 SALVRESRNSKDGDDDKIYFFFSERAVE-LDCDSDLTVARVARVCKGDLGGTRTLQKKWTTFQKA 282

  Fly   367 RMNCSISSEFP---FYFNEIQSVYKMPTDD---TKFYATFTTNTNGLIGSAVCSYDIRDINAAFD 425
            |:.||    ||   ..||.:::|:.:|..|   |.||..|......:..||||.|.|.::...||
Zfish   283 RLMCS----FPERHITFNNLRAVFTLPGADWRTTSFYGIFHAQWGDVDVSAVCQYQIGEVKNVFD 343

  Fly   426 GKFKEQATSNSAWLPVLNSKVPEPRPGTC---------HNDTATLPDSVLNFIRKHPLMDKAVDH 481
            |.:||...|:..| ......||.||||.|         :|.:..|||:.|||.:|||||:...: 
Zfish   344 GPYKEYRESSQRW-GRYTGTVPSPRPGACITNFDRENGYNSSLQLPDATLNFAKKHPLMELRAE- 406

  Fly   482 EFGNPVFFKRDVILTKLVVDKIRIDKLNQ-EFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFE 545
              ..|:...:.:..|:|.||  |:..|:| .:.:.|:.|..|.:.::|..    ...:::::..:
Zfish   407 --ARPLLLTKGINFTRLAVD--RVSSLDQRSYNMLFIGTADGWLQRVVIL----GSEAHVIEEIQ 463

  Fly   546 ASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDKDVNAC-- 606
            .....:|:..:|:||....||:.:..:|.|:.:|.|: ||.|...|:  .||||.||.:..||  
Zfish   464 LFDRQQPVDSLTISHSKKYLYIGSRSEVLQLPLANCS-RYHSQPDCLLSRDPYCAWDSEGRACVR 527

  Fly   607 ----RPYQLGLLQDVANE--TSGIC-----------DTSVLRKKVTSSYGQTLHLSCFVKMPEVL 654
                |.....|.||:..|  ..|..           |.|.|| .||...|..|.|.|.:    |.
Zfish   528 IDLHRGSTSTLSQDLMLERFNRGKAKFDKPFSIPSPDHSRLR-NVTVVVGSDLVLPCNL----VS 587

  Fly   655 RKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGD--GGRYDSYLDGTLLCSYGVTV 717
            ...|..|                    :.||..|.|:   ||:  |.|:|..|...::...| ::
Zfish   588 NLAQPFW--------------------ELNERELALV---EGEAIGPRFDRALRALVIPQAG-SL 628

  Fly   718 DAHR--CSPPSQKQDYQKIYSHWCNEFEKYKSAM 749
            .|.|  |....|...:|.         |:|:.|:
Zfish   629 QAGRYICYSEEQGVKFQT---------ERYQVAV 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 156/485 (32%)
Ig 632..720 CDD:299845 20/89 (22%)
sema4cNP_001121718.1 Sema_4C 40..497 CDD:200519 157/487 (32%)
PSI 498..541 CDD:279745 15/43 (35%)
Ig 569..656 CDD:299845 29/123 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.