DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and si:ch211-113g11.6

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_005158115.1 Gene:si:ch211-113g11.6 / 559008 ZFINID:ZDB-GENE-060503-473 Length:632 Species:Danio rerio


Alignment Length:675 Identity:163/675 - (24%)
Similarity:271/675 - (40%) Gaps:154/675 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 PLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDV------LILEPTGSDILNCVSKGK 177
            |.::.|.|..:..:.||||....|::|:.|       :::|      ::::....::  |.||..
Zfish    36 PENFTTVYHQQETDVLYVGGQGVIYKLSFR-------DKEVHDIQIPVVMDENAKEL--CHSKSS 91

  Fly   178 REKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVI--NANLTHLPRSQYVPGIGLGIGKCPY 240
            :.|.||.|.|.||:.:   |..:.||||.|..||.:::  ::.||.:........|     ..|:
Zfish    92 QWKHECDNFITVIEKV---GDSMVVCGTRAGTPKCWLLVNDSTLTDMSEETAASNI-----LAPF 148

  Fly   241 DPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLL 305
             |:..|.::..:..       ||:..:|...:..::            |:....|:.:|.::|.|
Zfish   149 -PSQRSISLSADEN-------LYSALSAAAGQTGTI------------RRTFGSKKQLKTENKWL 193

  Fly   306 DKPNFVGSF------EIGEFVYFFFREHAVEYINCGKAV-----YSRVARVCKNDRGG-KYMISQ 358
            ..|.|.|:.      ::...:||||.|     :|...::     .:|:.|||..|.|| :.::..
Zfish   194 QNPQFAGAAVIPHEEKLKNEIYFFFSE-----VNSSSSLDEEPYRARIGRVCMVDEGGLQNVLPN 253

  Fly   359 NWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDI 420
            :|.|:||||:.|. .|..|..:|..:..:.: |...:   .|..|:...|..:   ||:|.|.||
Zfish   254 SWTTFLKARVMCG-KSGTPVQYNNFKQAFVL-TSHLRTGLIYGIFSNAWNTTV---VCAYSIEDI 313

  Fly   421 NAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC--HNDTATLPDSVLNFIRKHPLMDKAVDHEF 483
            :.||          :|:.|...||.:..||||||  .|:|......:|:.||.||.:::.:....
Zfish   314 DKAF----------SSSKLKGYNSPLANPRPGTCAFKNNTQAHNQKILSVIRDHPEIEEVIGPVH 368

  Fly   484 GNPVFFKRDVILTKLVVDKIRIDKLNQE-FLVYFVATTSGHIYKIVQ-------FMHYGQRHSNL 540
            ..|:........|.:|.|.:.  .:|.| :.:.::.|..|.:.|::.       ...|...|.: 
Zfish   369 DVPLELSVQDHFTHIVADTVL--AVNDEHYSIIYLGTEKGKVLKVLHTIEGAFIIAQYSLFHDD- 430

  Fly   541 VDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDKDV 603
                      .|:..|.:..|.|.||:.|..:|:::.:|.|.|...||..|:  .||||.||...
Zfish   431 ----------SPVTNMAIDPKKGHLYIGTQLEVQRLPLADCGRYGLSCRECILSRDPYCAWDVHK 485

  Fly   604 NACRPYQLG------LLQDVANETSGICD-------TSVLRKKVTSSYGQTLHLSCFVKMPEVLR 655
            ..|.....|      |:|.:.:..:.||.       .|.:.|:|.......:.|.|.|       
Zfish   486 KKCTAITTGSINTGSLIQTLDHSNASICGDAKAPKARSTIPKEVLVDKDGPVLLPCPV------- 543

  Fly   656 KKQTRWYHHS--TEKGRYEVRY-----------TPTKYIDTNEGGLVLLAVNEG----------- 696
                |.||.|  .||......|           .||..:...||....||...|           
Zfish   544 ----RSYHASYRWEKDNCIKTYPCTISGSSCVLAPTPELPLKEGVFRCLAEESGLQQEVVSYKLV 604

  Fly   697 -DGGRYDSYLDGTLLCSYGVTVDAH 720
             :||...:.|..||..:..:.|.||
Zfish   605 FNGGPLSTSLASTLGSTLLLAVTAH 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 116/491 (24%)
Ig 632..720 CDD:299845 25/112 (22%)
si:ch211-113g11.6XP_005158115.1 Sema 37..459 CDD:301699 116/491 (24%)
PSI 460..>490 CDD:214655 12/29 (41%)
Ig 527..604 CDD:299845 19/87 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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