DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and si:dkey-49n23.1

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_021329223.1 Gene:si:dkey-49n23.1 / 558742 ZFINID:ZDB-GENE-050208-762 Length:758 Species:Danio rerio


Alignment Length:628 Identity:191/628 - (30%)
Similarity:299/628 - (47%) Gaps:83/628 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 YKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSD-ILNCVSKGKREKVECRN 185
            |:...:||....|.||..|.|:.||    |.|:.:....|..|.|.: |..|...||...::|.|
Zfish    57 YQALLLDEDRGWLLVGGRDHIYMLN----SDSLTQPSRKIHWPAGQEHIERCKYAGKNLSMDCAN 117

  Fly   186 HIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPGIG-LGIGKCPYDPADNSTA 248
            ::|::||  ||...:|||||.|.:|: .|:...:....|..|.:..:| .|.||||:.|.:..||
Zfish   118 YVRLLQP--FNKTHVYVCGTGAFHPQCTYIDLGHNLEKPTFQLLSHVGESGRGKCPFSPQEPFTA 180

  Fly   249 VYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGS 313
             ::.:|.      |||||..:|...::.|||:.:::     ...::.||..|....|::|.||||
Zfish   181 -HLTDGE------LYAGTAVDFMGTNAAIFRTSVHS-----NNQHYIRTEAYQDHWLNEPEFVGS 233

  Fly   314 FEI-------GEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCS 371
            :.|       .:.|||||:|.|||.....|.:|||||||||||.|||..:...|:|:||||:.|:
Zfish   234 YSIPDTHSLDDDKVYFFFKETAVESNQLDKRIYSRVARVCKNDIGGKRSLINRWSTFLKARLVCT 298

  Fly   372 ISSE--FPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQ 431
            :...  ...:|:|::.::.:.|.|.:   .|..|:|:::...|||||.|.:..|.|||:|.|..:
Zfish   299 VPGPGGMDTHFDELEDIFLLETKDPQNPVIYGVFSTSSSVFRGSAVCVYSMASIRAAFNGPFAHK 363

  Fly   432 ATSNSAWLPVLNSKVPEPRPGTC--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVF 488
            .:.:..|:. ...|:|.||||||        :..|...||.|::|:|.|.||.:.|......|||
Zfish   364 ESPDYRWME-YKGKIPYPRPGTCPSETYDALYKSTRDFPDDVVSFMRAHQLMWEPVVPIHRRPVF 427

  Fly   489 FKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLV----DIFEAS 547
            .:.:.  .|.|||||  |:|..:.::.|..:.|..|.:.|:|...........::    ::|:. 
Zfish   428 TRINTPYRLKKLVVD--RVDAEDGQYDVLHLGTDDGRVLKVVSVPKENWEIEEIILEELNVFKT- 489

  Fly   548 PHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPY- 609
              ..||..|.||.|...|::::|..|.|:.:..|.....:|..|  ..||||.||.  ::|..| 
Zfish   490 --QTPILSMELSTKRQVLFISSDENVVQLPVQRCELYGKACVDCCLARDPYCAWDG--SSCTNYF 550

  Fly   610 ----QLGLLQDVA-----NETSGICDTSVLRKKVTSSYG---QTLHLSCFVKMPEVLRKKQTRWY 662
                :....|||.     ::...:.|.|. ..::.:.||   .:..|.|....|:...|...:..
Zfish   551 PSNKRRARRQDVRYGDPWSQCQDMRDGSE-NAELKTVYGVETNSTFLECVSNSPQATIKWIFQPN 614

  Fly   663 HHSTEK----GRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRY 701
            |....|    |...:.:.        :.||:|..:...:.|.|
Zfish   615 HSQNSKELVPGEENLLHM--------QRGLLLQQITSTNAGLY 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 161/485 (33%)
Ig 632..720 CDD:299845 14/77 (18%)
si:dkey-49n23.1XP_021329223.1 Sema_3 48..521 CDD:200500 161/487 (33%)
PSI 520..557 CDD:214655 11/38 (29%)
Ig_Semaphorin_classIII 581..672 CDD:143279 14/77 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9670
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X596
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.020

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