DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and si:dkey-49n23.1

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_687092.1 Gene:si:dkey-49n23.1 / 558742 ZFINID:ZDB-GENE-050208-762 Length:758 Species:Danio rerio


Alignment Length:628 Identity:190/628 - (30%)
Similarity:296/628 - (47%) Gaps:83/628 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 YKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSD-ILNCVSKGKREKVECRN 185
            |:...:||....|.||..|.|:.||    |.|:.:....|..|.|.: |..|...||...::|.|
Zfish    57 YQALLLDEDRGWLLVGGRDHIYMLN----SDSLTQPSRKIHWPAGQEHIERCKYAGKNLSMDCAN 117

  Fly   186 HIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPGIG-LGIGKCPYDPADNSTA 248
            ::|::||  ||...:|||||.|.:|: .|:...:....|..|.:..:| .|.||||:.|.:..||
Zfish   118 YVRLLQP--FNKTHVYVCGTGAFHPQCTYIDLGHNLEKPTFQLLSHVGESGRGKCPFSPQEPFTA 180

  Fly   249 VYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGS 313
            ...:.       .|||||..:|...::.|||:.:::     ...::.||..|....|::|.||||
Zfish   181 RLTDG-------ELYAGTAVDFMGTNAAIFRTSVHS-----NNQHYIRTEAYQDHWLNEPEFVGS 233

  Fly   314 FEI-------GEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCS 371
            :.|       .:.|||||:|.|||.....|.:|||||||||||.|||..:...|:|:||||:.|:
Zfish   234 YSIPDTHSLDDDKVYFFFKETAVESNQLDKRIYSRVARVCKNDIGGKRSLINRWSTFLKARLVCT 298

  Fly   372 ISSE--FPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQ 431
            :...  ...:|:|::.::.:.|.|.:   .|..|:|:::...|||||.|.:..|.|||:|.|..:
Zfish   299 VPGPGGMDTHFDELEDIFLLETKDPQNPVIYGVFSTSSSVFRGSAVCVYSMASIRAAFNGPFAHK 363

  Fly   432 ATSNSAWLPVLNSKVPEPRPGTC--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVF 488
            .:.:..|:. ...|:|.||||||        :..|...||.|::|:|.|.||.:.|......|||
Zfish   364 ESPDYRWME-YKGKIPYPRPGTCPSETYDALYKSTRDFPDDVVSFMRAHQLMWEPVVPIHRRPVF 427

  Fly   489 FKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLV----DIFEAS 547
            .:.:.  .|.|||||  |:|..:.::.|..:.|..|.:.|:|...........::    ::|:. 
Zfish   428 TRINTPYRLKKLVVD--RVDAEDGQYDVLHLGTDDGRVLKVVSVPKENWEIEEIILEELNVFKT- 489

  Fly   548 PHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC--VSDPYCGWDKDVNACRPY- 609
              ..||..|.||.|...|::::|..|.|:.:..|.....:|..|  ..||||.||.  ::|..| 
Zfish   490 --QTPILSMELSTKRQVLFISSDENVVQLPVQRCELYGKACVDCCLARDPYCAWDG--SSCTNYF 550

  Fly   610 ----QLGLLQDVA-----NETSGICDTSVLRKKVTSSYG---QTLHLSCFVKMPEVLRKKQTRWY 662
                :....|||.     ::...:.|.|. ..::.:.||   .:..|.|....|:...|...:..
Zfish   551 PSNKRRARRQDVRYGDPWSQCQDMRDGSE-NAELKTVYGVETNSTFLECVSNSPQATIKWIFQPN 614

  Fly   663 HHSTEK----GRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRY 701
            |....|    |...:.:.        :.||:|..:...:.|.|
Zfish   615 HSQNSKELVPGEENLLHM--------QRGLLLQQITSTNAGLY 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 160/485 (33%)
PSI 583..>606 CDD:396154 8/24 (33%)
Ig 632..724 CDD:472250 14/77 (18%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 2/3 (67%)
Ig strand F 700..705 CDD:409353 1/2 (50%)
Ig strand G 717..720 CDD:409353
si:dkey-49n23.1XP_687092.1 Sema_3 48..521 CDD:200500 160/487 (33%)
PSI 520..557 CDD:214655 11/38 (29%)
Ig_Sema3 580..672 CDD:409455 14/78 (18%)
Ig strand A 580..586 CDD:409455 0/5 (0%)
Ig strand B 591..599 CDD:409455 1/7 (14%)
Ig strand C 605..611 CDD:409455 1/5 (20%)
Ig strand C' 613..616 CDD:409455 0/2 (0%)
Ig strand D 627..631 CDD:409455 0/3 (0%)
Ig strand E 634..641 CDD:409455 3/6 (50%)
Ig strand F 647..656 CDD:409455 2/3 (67%)
Ig strand G 659..672 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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