DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema6dl

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_005173705.1 Gene:sema6dl / 550377 ZFINID:ZDB-GENE-050417-171 Length:1070 Species:Danio rerio


Alignment Length:831 Identity:229/831 - (27%)
Similarity:354/831 - (42%) Gaps:203/831 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RLCSLSALLLVLVA----------QTVHVEYARADYENTWNLYYEPPCCTGSSAAHHLRHHKEHV 112
            |..::..|:|:|||          ..:.::.....|...:.::...|  :|:.:.|.|       
Zfish     4 RELTIDLLILLLVASRLDAVSFPEDNIPLDVVDRHYARQYPVFRGRP--SGNESQHRL------- 59

  Fly   113 QDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLR-NISQSICERDVLILEPTGSDILNCVSKG 176
             ||.         .|.:.::.|::...|:::.::|| :....|.....|......:|...|..||
Zfish    60 -DFQ---------LMTQIHDTLFIAGRDQVYLVSLRESYRNEIIPYRKLTWRSGQADRETCAMKG 114

  Fly   177 KREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYD 241
            | .:.||.|.|:|:.|.  |...:::||||..||.     .....|...::......|:.:||:|
Zfish   115 K-HRDECHNFIKVLVPR--NDDLVFICGTNGFNPM-----CRYYRLDNLEFDGEEISGLARCPFD 171

  Fly   242 PADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYDSKLLD 306
            ....:.|::.:.       .||:.|.|:|..:|:||:||        ..:.:..||:|||||.|.
Zfish   172 AKQTNVALFADG-------KLYSATVADFLASDAVIYRS--------MGDGSALRTIKYDSKWLK 221

  Fly   307 KPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGG-KYMISQNWATYLKARMNC 370
            :|:|:.:.:.|:||||||||.|.|:.|.||||||||||:||||.|| :.::.::|.:::|||:||
Zfish   222 EPHFLHAVDYGDFVYFFFREIAAEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFVKARLNC 286

  Fly   371 SISSEFPFYFNEIQSVYKMPTD------DTKFYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFK 429
            |:..|..|||:.:|::    ||      .......|||..|.:.|||||::.:.||..||.|:||
Zfish   287 SVPGESFFYFDVLQAI----TDIIDINGVPSVVGVFTTQLNSIPGSAVCAFSMVDIEKAFRGRFK 347

  Fly   430 EQATSNSAWLPVLNSKVPEPRPGTC--------HNDTATLPDSVLNFIRKHPLMDKAVDHEFGNP 486
            ||.|.:|.|.|....|:|:||||.|        :..:...||..|.||:.|||||.:|......|
Zfish   348 EQKTPDSVWTPFPEEKLPKPRPGCCAGHGSAESYKTSIEFPDETLQFIKSHPLMDASVPSIGDEP 412

  Fly   487 VFFKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNL--------- 540
            .|.|..|  .||.|.||.......|  :.|.|:.:.:|.:.|::      .:.|.|         
Zfish   413 WFTKTRVRYRLTALAVDNTAGPHKN--YTVVFIGSEAGIVLKVL------AKTSPLSLNDSVLLE 469

  Fly   541 -VDIF------EASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CVS--DP 595
             :|:|      .::.....|....|...:.:||||....|.:|.::.| .|:.||.: |::  ||
Zfish   470 EIDVFNQAKCLSSNEDDRRILSFHLDKDSHTLYVAFSSCVVRIPLSRC-ERHSSCQKSCIASRDP 533

  Fly   596 YCGWDKDVNACR----PYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHL------------ 644
            |||| ....||.    ..|.|..|||                   .||.|.||            
Zfish   534 YCGW-MSHGACERIPATMQSGYEQDV-------------------EYGNTAHLGDCHEFLATTSA 578

  Fly   645 ----------------SCFVKMP---EVLRKKQTR-------WYHHSTEKGRYEVRYTPTKYIDT 683
                            |..|.:|   |.::..||.       :..|......:.|.:.|.     
Zfish   579 PDFKSYGDPTSDMELPSSSVTVPATSEPIQSPQTNPTQTPQLFEPHGDPATSHSVEHIPG----- 638

  Fly   684 NEGGLVLLAVNEGDGGRYDSYLDGTLLCS------------YGVTV----DAHRCSPPSQKQDYQ 732
                 ||..|.|...|..:..:...:|.|            .|:.|    ||...:|...::|.:
Zfish   639 -----VLEGVWEIQAGESNQMVHMNILISCVLAAFLLGAFIAGMVVYCYRDAFLRTPRKIQKDAE 698

  Fly   733 KIYSHWCNE----FEK----YKSAMKQWQAKQEQCGLKDKTGPISSNGKHV 775
            ...|  |.:    |.|    :.|.:|::|...:...|...   :.|||:.|
Zfish   699 SAQS--CTDSTGSFAKLNGLFDSPVKEYQPNLDTPKLYTN---LLSNGREV 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 159/492 (32%)
Ig 632..720 CDD:299845 24/141 (17%)
sema6dlXP_005173705.1 Sema 51..515 CDD:301699 164/515 (32%)
PSI 516..570 CDD:279745 23/74 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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