DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and Sema5c

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster


Alignment Length:796 Identity:217/796 - (27%)
Similarity:338/796 - (42%) Gaps:188/796 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GSMCATGKGKHRLCSLSALLLVLVAQTVHVEYARADYENTWNLYYEPPCCTGSSAAHHLRHHKEH 111
            |...:||.|.....|:.    :|...:.::.|  .|..:|...:|:|.                 
  Fly    28 GPQPSTGSGYTTKSSVD----LLENDSRYISY--QDLMSTAKRFYDPE----------------- 69

  Fly   112 VQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEP--------TGSD 168
                   ...|.....|...|.:.|||.|.::|::..             |||        |.|:
  Fly    70 -------TTWYSEMLFDVARNQVIVGARDTLYRMSFD-------------LEPLERASWGATPSE 114

  Fly   169 ILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPGIG 232
            |..|.:||:.|: .|||::||:.  ::...:||.|||||..|. .:....|||       |.|:.
  Fly   115 IAMCQAKGQSER-WCRNYVRVLH--SYGENQLYACGTNAFQPSCSWRQMENLT-------VTGVD 169

  Fly   233 LGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEAN--FK 295
            .|:.|||:.|..|||::...||.      |:.||..:|:.:|..|.|:.:        |:|  |.
  Fly   170 SGVVKCPFHPQANSTSLLQSNGQ------LFVGTATDFSGSDVAILRTGV--------ESNKRFL 220

  Fly   296 RTVKYDSKLLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKND-RGGKYMISQN 359
            ||.:|::..|....||||||.|.||||..||.|.|:::|||.:||||||||||| .||..::..|
  Fly   221 RTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDN 285

  Fly   360 WATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTKFYATFTTNTNGLIGSAVCSYDIRDINAAF 424
            |.::||||:|||:..|:|:||:|||.: .....::..||||.|:.:.:.|||||:|::..|||||
  Fly   286 WTSFLKARLNCSLPGEYPYYFDEIQGM-TYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAF 349

  Fly   425 DGKFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIR--KHPLMDKAVDHEFGNPV 487
            ||.||:|..|::||..|..::..:.:.||         .|:.:::.  ::.|||:||......|:
  Fly   350 DGPFKQQEHSDAAWKTVNTNQRSQFQCGT---------SSIGHWLESSRYQLMDEAVQPIGAEPL 405

  Fly   488 FFKR---------DVILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKI-VQFMHYGQRHSNLVD 542
            :..:         |:|.||           .::..|.|||::..||.|: |::...|.: :.||:
  Fly   406 YHSKLEQFGRLALDIINTK-----------TEQVHVLFVASSGNHIKKLSVKYDGDGVQ-TCLVE 458

  Fly   543 IFEA-SPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARR--YDSCFRCVSDPYCGWDKDVN 604
            :::| ...:..:..|.....:.|||:.||..:.:|....|:|.  ..||...: ||||||::.|.
  Fly   459 LWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSM-DPYCGWNELVE 522

  Fly   605 ACRPYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRW------YH 663
            .|.|...              |:|||:     .:.|...::|.| :...:....:.|      ..
  Fly   523 RCMPQPQ--------------DSSVLQ-----HWHQAPQITCPV-LNAPIDGGWSTWSPWAVCQQ 567

  Fly   664 HSTEKGRYEVRYTPTKYIDTNEGGL--------VLLAVNEGDGGRYDSYLDGTLLCSYGVTVDAH 720
            |.......:.|...........||.        |......|....:.::...:..|...|.:...
  Fly   568 HEQPDSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQTCGIAVKIRRR 632

  Fly   721 RCSPP------------SQKQDY------------QKIYSHWCNEFEKYKSAMKQWQAKQEQCGL 761
            .|..|            .|.:.|            |.:...|        ....:|.....||| 
  Fly   633 TCGNPRPAFGGRTCVGSEQSEMYCRHLPPCPVAKPQSVDGGW--------GPWGEWSECSAQCG- 688

  Fly   762 KDKTGPISSNGKHVND 777
                |......:..||
  Fly   689 ----GGFRMRRRECND 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 164/483 (34%)
PSI 583..>606 CDD:396154 10/24 (42%)
Ig 632..724 CDD:472250 13/105 (12%)
Ig strand B 642..646 CDD:409353 0/3 (0%)
Ig strand C 658..662 CDD:409353 1/9 (11%)
Ig strand E 686..690 CDD:409353 2/11 (18%)
Ig strand F 700..705 CDD:409353 0/4 (0%)
Ig strand G 717..720 CDD:409353 0/2 (0%)
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 166/513 (32%)
PSI 497..546 CDD:396154 18/68 (26%)
TSP1 556..607 CDD:214559 6/50 (12%)
TSP1 610..663 CDD:214559 6/52 (12%)
TSP1 674..725 CDD:214559 8/40 (20%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.