DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema6a

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_003751830.1 Gene:Sema6a / 361324 RGDID:1305493 Length:1048 Species:Rattus norvegicus


Alignment Length:706 Identity:217/706 - (30%)
Similarity:322/706 - (45%) Gaps:158/706 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NNALYVGAMDRIFRLNL--RNISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPM 193
            |..||:.|.|.|:.:::  .:..:..|.:. |..:...:|:..|..||| .|.||.|.|:|:  :
  Rat    65 NRTLYIAARDHIYTVDIDTSHTEEIYCSKK-LTWKSRQADVDTCRMKGK-HKDECHNFIKVL--L 125

  Fly   194 NFNGQKLYVCGTNAHNP--KDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNP 256
            ..|...|:||||||.||  ::|.::...|......       |:.:||||....:.|::.:.   
  Rat   126 KKNDDTLFVCGTNAFNPSCRNYRVDTLETFGDEFS-------GMARCPYDAKHANIALFADG--- 180

  Fly   257 FGLPALYAGTNAEFTKADSVIFRS--DLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSFEIGEF 319
                .||:.|..:|...|:||:||  |...|          ||||:|||.|.:|.||.:.:.|::
  Rat   181 ----KLYSATVTDFLAIDAVIYRSLGDSPTL----------RTVKHDSKWLKEPYFVQAVDYGDY 231

  Fly   320 VYFFFREHAVEYINCGKAVYSRVARVCKNDRGG-KYMISQNWATYLKARMNCSISSEFPFYFNEI 383
            :||||||.||||...||.|:.|||:|||||.|| :.::.:.|.::||||:|||:..:..||||.:
  Rat   232 IYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNIL 296

  Fly   384 QSVYKMPTDDTKF------YATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVL 442
            |:|    ||..:.      .|||:|..|.:.|||||:||:.||...|.|:||||.:.:|.|.||.
  Rat   297 QAV----TDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVP 357

  Fly   443 NSKVPEPRPGTCHNDTA--------TLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVI---LT 496
            :.:||:||||.|...::        ..||..||||:.|||||:||......| :|.|.::   ||
  Rat   358 DERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRP-WFLRTMVRYRLT 421

  Fly   497 KLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQ------FMHYGQRHSNLVDIFEASPHS----- 550
            |:.||.......|.  .|.|:.:..|.|.|.:.      |:: |......::::.....|     
  Rat   422 KIAVDNTAGPYENH--TVVFLGSEKGIILKFLARIGSSGFLN-GSLFLEEMNVYNPEKCSYDGVE 483

  Fly   551 -EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CVS--DPYCGWDKDVNACRPY-- 609
             :.|..|.|...:||||||....|.::.:..| .|:..|.: |::  ||||||.|:..:|...  
  Rat   484 DKRIMGMQLDKASGSLYVAFSTCVIKVPLGRC-ERHGKCKKTCIASRDPYCGWVKETGSCAHLSP 547

  Fly   610 --QLGLLQDV-ANETSGICDTSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRY 671
              :|...||: ...|.|:.|               .|.| ||.:.::           ||....|
  Rat   548 LSRLAFEQDIERGNTDGLGD---------------CHNS-FVALNDI-----------STPLPDY 585

  Fly   672 EVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLDGTLLCSYGVTVDAHRCSPPSQKQDYQKIYS 736
            |:.:. |.|                  ||..|....| ..|...:.|.|                
  Rat   586 EMSFN-TVY------------------GRASSLYPST-TTSDSASRDGH---------------- 614

  Fly   737 HWCNEFEKYKSAMKQWQAKQEQCGLKDKTGPISSNGKH-----VNDVF--SNDALV 785
                   :.:..|..|....:..|..|..|.:||:...     :.:.:  |||.||
  Rat   615 -------ESQGGMLDWNDLLKAPGNTDPLGAVSSHNHQDKKGVIRESYLKSNDQLV 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 170/483 (35%)
Ig 632..720 CDD:299845 16/87 (18%)
Sema6aXP_003751830.1 Sema_6A 48..513 CDD:200527 170/483 (35%)
PSI 514..>544 CDD:396154 12/30 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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