DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema6a

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_073765270.1 Gene:sema6a / 336060 ZFINID:ZDB-GENE-030131-8004 Length:982 Species:Danio rerio


Alignment Length:666 Identity:207/666 - (31%)
Similarity:317/666 - (47%) Gaps:139/666 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 ALLLVLV----------AQTVHVEYARADYENTWNLY--YEPPCCTGSSAAHHLRHHKEHVQDFS 116
            ||||.|.          ..|..:..|..:|...:.::  ::|       ..::.:.||..:|   
Zfish     5 ALLLYLTLLQTAGAAFPEDTEPISIAHGNYTKQYPVFVGHKP-------GRNNTQRHKLDIQ--- 59

  Fly   117 CGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNIS-QSICERDVLILEPTGSDILNCVSKGKREK 180
                     .:...|..|||.|.|.|:.|::...| :.|.....|..:...:|:..|..||| .|
Zfish    60 ---------LIVIMNRTLYVAARDHIYTLDMETSSTEEIFFSKKLTWKSRQADVDTCRMKGK-HK 114

  Fly   181 VECRNHIRVIQPMNFNGQKLYVCGTNAHNP--KDYVINANLTHLPRSQYVPGIG---LGIGKCPY 240
            .||.|.|:|:  :..:...|:||||||.||  :.|          |...:..:|   .|:.:|||
Zfish   115 DECHNFIKVL--LQQSEDSLFVCGTNAFNPSCRTY----------RMDSLDALGEEISGMARCPY 167

  Fly   241 DPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRS--DLYNLTNGRKEANFKRTVKYDSK 303
            |....:.|::.:.       .||:.|..:|...|:||:||  |...|          ||||:|||
Zfish   168 DAKHANVALFADG-------KLYSATVTDFLAIDAVIYRSLGDSPTL----------RTVKHDSK 215

  Fly   304 LLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGG-KYMISQNWATYLKAR 367
            .|.:|.||.:.:.|:|:||||||.|:||.:.||.|:.|||||||:|.|| :.::.:.|.::||.|
Zfish   216 WLKEPYFVQAVDYGDFIYFFFREIAMEYNSMGKVVFPRVARVCKSDSGGSQRVLEKQWTSFLKTR 280

  Fly   368 MNCSISSEFPFYFNEIQSVYKMPTDDTKF------YATFTTNTNGLIGSAVCSYDIRDINAAFDG 426
            :||||..:..||||.:|:|    ||....      .|||:|..|.:.|||||:||:.:|..||.|
Zfish   281 LNCSIPGDSHFYFNILQAV----TDVIHISGRDVVMATFSTPYNSIPGSAVCAYDMSEIALAFTG 341

  Fly   427 KFKEQATSNSAWLPVLNSKVPEPRPGTCHNDTAT--------LPDSVLNFIRKHPLMDKAVDHEF 483
            :||||.:.:|.|.||...:||:||||.|...::.        .||..|:||:.||||::||....
Zfish   342 RFKEQKSPDSTWTPVPEERVPKPRPGVCAGSSSVEKFKVSSEFPDDSLSFIKAHPLMEEAVPAIA 406

  Fly   484 GNPVFFKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNL----VD 542
            ..|.|.|..|  .||::.||.......|.  .|.|:.:..|.:.|.:..:..|..:.:|    ::
Zfish   407 NRPWFLKTMVRYRLTRIAVDNAAGPHNNH--TVVFLGSERGIVLKFLAKIRSGALNDSLFLEELN 469

  Fly   543 IFEASPHS------EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFR-CVS--DPYCG 598
            ::.|...|      :.|..|.:..::.||:||....|.::.:|.| :|:..|.: |::  |||||
Zfish   470 VYNAEKCSIDGVEDKRIISMQIDSRSRSLFVAFSSCVVRVPLARC-QRHGKCKKSCIASRDPYCG 533

  Fly   599 WDKDVNACR--------PYQLGLLQDV-ANETSGICDTSVLRKKVTSSYGQTLHLSCFVKMPEVL 654
            |..: .|||        |::    ||| ...|.|:.|..                :.||.:.|:.
Zfish   534 WVSE-GACREITSDAKWPFE----QDVEQGNTDGLGDCQ----------------NSFVALNELQ 577

  Fly   655 RKKQTRWYHHSTEKGR 670
            |:..   :..:..:||
Zfish   578 RRSD---FTQNAPRGR 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 168/493 (34%)
PSI 583..>606 CDD:396154 9/25 (36%)
Ig 632..724 CDD:472250 6/39 (15%)
Ig strand B 642..646 CDD:409353 0/3 (0%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353
Ig strand F 700..705 CDD:409353
Ig strand G 717..720 CDD:409353
sema6aXP_073765270.1 None
Blue background indicates that the domain is not in the aligned region.

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