DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4a

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001012078.2 Gene:Sema4a / 310630 RGDID:1304636 Length:762 Species:Rattus norvegicus


Alignment Length:683 Identity:191/683 - (27%)
Similarity:297/683 - (43%) Gaps:134/683 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ENTWNL----YYE-------PPC--CTGSSAAHHLRHH------------KEHVQDFSCGPLHYK 123
            ::.|:|    :::       ||.  ..|......:::|            ::.::||.       
  Rat    10 QDPWSLLSVFFFQLFLLLSLPPASGTGGQGPVPRVKYHAGDGHRALSFFQQKGLRDFD------- 67

  Fly   124 TFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILN-CVSKGKREKVECRNHI 187
            |..:....|.|||||.:.|..||:.|  ..|.....:|..|......| |..|.|..:.:|.|.|
  Rat    68 TLLLSGDGNTLYVGAREAILALNIEN--PGIPRLRNMIPWPASEKKKNECAFKKKSNETQCFNFI 130

  Fly   188 RVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVP----GIGLGIGKCPYDPADNSTA 248
            ||:  :::|...||.|||.|.:|.     .....|..|..:|    .:..|.|:.|:|||...||
  Rat   131 RVL--VSYNATHLYACGTFAFSPA-----CTFIELQDSFLLPILKDKVTDGKGQSPFDPAHKHTA 188

  Fly   249 VYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGR----KEANFKRTVKYDSKLLDKPN 309
            |.|:.       .||:||...|..::.::.|      |.|.    |...|.|.:..|:      :
  Rat   189 VLVDG-------MLYSGTMNNFLGSEPILMR------TLGSQPVLKTDIFLRWLHPDA------S 234

  Fly   310 FVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSISS 374
            ||.:....:.|||||.|.|.|:....:...||||:|||||.||:.::.:.|.|:|||::.|:...
  Rat   235 FVAAIPSTQVVYFFFEETASEFDFFEELYTSRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPG 299

  Fly   375 EFPFYFNEIQSVYKMPTDD---TKFYATFTT--NTNGLIGSAVCSYDIRDINAAFDGKFKEQATS 434
            :.|  ||.|:....:|.|.   .:.||.||:  ...|...||||::.:.||...|.||:||....
  Rat   300 QLP--FNIIRHAVLLPADSPSVPRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKE 362

  Fly   435 NSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLV 499
            .|.|.....|:| .||||:|....::  |..|.|::.|.|||   :|..|.|:..|..|..|:|.
  Rat   363 TSRWTTYRGSEV-NPRPGSCSMGPSS--DKALTFMKDHFLMD---EHVVGAPLLVKSGVEYTQLA 421

  Fly   500 VDKIR-IDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHS-NLVDIFEASPHSEPIREMTLSHKT 562
            |:..: :|  ....:|.::.|::|.::|.|    ..|..| .||:..:.||:|||::.:.|:...
  Rat   422 VETAQGLD--GSSHVVLYLGTSTGSLHKAV----VPQNSSAYLVEEIQLSPNSEPVQNLQLAPTQ 480

  Fly   563 GSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDKDVNACRPYQLGLL--------QDV 617
            |:::......:.::..|.|: .|.||..||  .||:|.||.:...|     .||        ||:
  Rat   481 GAVFAGFSEGIWRVPRANCS-VYKSCVDCVLARDPHCAWDPESRLC-----SLLSGSPLTWKQDM 539

  Fly   618 -ANETSGIC------------DTSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKG 669
             .......|            .:..|.|:|.:.....|.|.|    |::.......|.|     |
  Rat   540 ERGNPEWACARGPMARSPRRQSSPQLIKEVLTVPNSILELPC----PQLSALASYHWSH-----G 595

  Fly   670 RYEV-RYTPTKYIDTNEGGLVLLAVNEGDGGRY 701
            :.:: ..:.|.|     .|.:||...:|.||.|
  Rat   596 KAKIPEASSTVY-----NGSLLLLPQDGVGGLY 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 146/474 (31%)
PSI 583..>606 CDD:396154 10/24 (42%)
Ig 632..724 CDD:472250 18/71 (25%)
Ig strand B 642..646 CDD:409353 2/3 (67%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 1/3 (33%)
Ig strand F 700..705 CDD:409353 1/2 (50%)
Ig strand G 717..720 CDD:409353
Sema4aNP_001012078.2 Sema 57..497 CDD:472829 148/488 (30%)
PSI 498..542 CDD:214655 16/49 (33%)
Ig 572..639 CDD:472250 16/66 (24%)
Ig strand B 577..581 CDD:409353 2/3 (67%)
Ig strand C 589..593 CDD:409353 0/3 (0%)
Ig strand E 608..612 CDD:409353 1/3 (33%)
Ig strand F 622..627 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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