DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4a

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001012078.2 Gene:Sema4a / 310630 RGDID:1304636 Length:762 Species:Rattus norvegicus


Alignment Length:683 Identity:191/683 - (27%)
Similarity:297/683 - (43%) Gaps:134/683 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ENTWNL----YYE-------PPC--CTGSSAAHHLRHH------------KEHVQDFSCGPLHYK 123
            ::.|:|    :::       ||.  ..|......:::|            ::.::||.       
  Rat    10 QDPWSLLSVFFFQLFLLLSLPPASGTGGQGPVPRVKYHAGDGHRALSFFQQKGLRDFD------- 67

  Fly   124 TFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDILN-CVSKGKREKVECRNHI 187
            |..:....|.|||||.:.|..||:.|  ..|.....:|..|......| |..|.|..:.:|.|.|
  Rat    68 TLLLSGDGNTLYVGAREAILALNIEN--PGIPRLRNMIPWPASEKKKNECAFKKKSNETQCFNFI 130

  Fly   188 RVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQYVP----GIGLGIGKCPYDPADNSTA 248
            ||:  :::|...||.|||.|.:|.     .....|..|..:|    .:..|.|:.|:|||...||
  Rat   131 RVL--VSYNATHLYACGTFAFSPA-----CTFIELQDSFLLPILKDKVTDGKGQSPFDPAHKHTA 188

  Fly   249 VYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGR----KEANFKRTVKYDSKLLDKPN 309
            |.|:.       .||:||...|..::.::.|      |.|.    |...|.|.:..|:      :
  Rat   189 VLVDG-------MLYSGTMNNFLGSEPILMR------TLGSQPVLKTDIFLRWLHPDA------S 234

  Fly   310 FVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSISS 374
            ||.:....:.|||||.|.|.|:....:...||||:|||||.||:.::.:.|.|:|||::.|:...
  Rat   235 FVAAIPSTQVVYFFFEETASEFDFFEELYTSRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPG 299

  Fly   375 EFPFYFNEIQSVYKMPTDD---TKFYATFTT--NTNGLIGSAVCSYDIRDINAAFDGKFKEQATS 434
            :.|  ||.|:....:|.|.   .:.||.||:  ...|...||||::.:.||...|.||:||....
  Rat   300 QLP--FNIIRHAVLLPADSPSVPRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKE 362

  Fly   435 NSAWLPVLNSKVPEPRPGTCHNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLV 499
            .|.|.....|:| .||||:|....::  |..|.|::.|.|||   :|..|.|:..|..|..|:|.
  Rat   363 TSRWTTYRGSEV-NPRPGSCSMGPSS--DKALTFMKDHFLMD---EHVVGAPLLVKSGVEYTQLA 421

  Fly   500 VDKIR-IDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHS-NLVDIFEASPHSEPIREMTLSHKT 562
            |:..: :|  ....:|.::.|::|.::|.|    ..|..| .||:..:.||:|||::.:.|:...
  Rat   422 VETAQGLD--GSSHVVLYLGTSTGSLHKAV----VPQNSSAYLVEEIQLSPNSEPVQNLQLAPTQ 480

  Fly   563 GSLYVATDHQVKQIDIAMCARRYDSCFRCV--SDPYCGWDKDVNACRPYQLGLL--------QDV 617
            |:::......:.::..|.|: .|.||..||  .||:|.||.:...|     .||        ||:
  Rat   481 GAVFAGFSEGIWRVPRANCS-VYKSCVDCVLARDPHCAWDPESRLC-----SLLSGSPLTWKQDM 539

  Fly   618 -ANETSGIC------------DTSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKG 669
             .......|            .:..|.|:|.:.....|.|.|    |::.......|.|     |
  Rat   540 ERGNPEWACARGPMARSPRRQSSPQLIKEVLTVPNSILELPC----PQLSALASYHWSH-----G 595

  Fly   670 RYEV-RYTPTKYIDTNEGGLVLLAVNEGDGGRY 701
            :.:: ..:.|.|     .|.:||...:|.||.|
  Rat   596 KAKIPEASSTVY-----NGSLLLLPQDGVGGLY 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 146/474 (31%)
Ig 632..720 CDD:299845 18/71 (25%)
Sema4aNP_001012078.2 Sema 57..497 CDD:301699 148/488 (30%)
PSI 498..542 CDD:214655 16/49 (33%)
Ig 567..639 CDD:299845 18/71 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.870

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