DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and Sema4d

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001164034.1 Gene:Sema4d / 306790 RGDID:1310554 Length:862 Species:Rattus norvegicus


Alignment Length:852 Identity:243/852 - (28%)
Similarity:364/852 - (42%) Gaps:180/852 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MCATGKGKHRLCSLSALLLVLVA--QTVHVEYARADYENTWN-------LYYEPPCCTGSSAAHH 104
            |||..:|         |.|.|||  :|. |.:|... ..||.       .::||           
  Rat     3 MCAPVRG---------LFLALVAVWRTA-VAFAPVP-RITWEHGEVGLVKFHEP----------- 45

  Fly   105 LRHHKEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLILEPTGSDI 169
                         |..:|.:..|.|..:.|||||.:.:|.:|..:||:...|....:.|...|  
  Rat    46 -------------GIFNYSSLLMSEDKDTLYVGAREAVFAVNALDISEKQHEVYWKVSEDKKS-- 95

  Fly   170 LNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPK-DYVINANLTHLPRSQYVPGIGL 233
             .|..|||.::.||.|:|||:||:  :...||||||||..|. |::...:...|.:|:.      
  Rat    96 -KCAEKGKSKQTECLNYIRVLQPL--SSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSED------ 151

  Fly   234 GIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTV 298
            |.|:||:|||.:.|:|.|..       .||:||:..|..::.:|.|:..::..         || 
  Rat   152 GKGRCPFDPAHSYTSVMVGG-------ELYSGTSYNFLGSEPIISRNSSHSPL---------RT- 199

  Fly   299 KYDSKLLDKPNFV----------GSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRGGK 353
            :|....|::|:||          |:....:.|||||.|.:|||....|.:..|||||||.|:||.
  Rat   200 EYAIPWLNEPSFVFADVIHKSPDGTEAEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGL 264

  Fly   354 YMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTK---FYATFTTNTNGLIGSAVCSY 415
            ..:.:.|.::||||:.|| ..:....||.:|.|:.:.....|   |||.||...|.:..||||:|
  Rat   265 RTLQKKWTSFLKARLICS-RPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAY 328

  Fly   416 DIRDINAAFD-GKFKEQAT---SNSAWLPVLNSKVPEPRPGTC---------HNDTATLPDSVLN 467
            .:..:.|.|. ||:.:.||   |::.|:. .|..||.||||.|         :..:..|||..|.
  Rat   329 TLSTVEAVFSRGKYMQSATVEQSHTKWVR-YNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQ 392

  Fly   468 FIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKIRIDKLNQEFL-VYFVATTSGHIYKIVQFM 531
            |::.|||||.:|......|...|:||..|::|||  |...|:..|. |.|::|..|.::|.|.. 
  Rat   393 FVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVD--RTQALDGTFYDVMFLSTDRGALHKAVIL- 454

  Fly   532 HYGQRHSNLVDIFEASPHSEPIREMTLSHKTGS--LYVATDHQVKQIDIAMCARRYDSCFRCV-- 592
               .:..::|:..:.....||:..:.||.|.|.  :|..::..|.|..:|.|. ::.||..||  
  Rat   455 ---AKEVHVVEETQLFQDFEPVLSLLLSSKKGRKFVYAGSNSGVVQAPLAFCG-KHSSCEDCVLA 515

  Fly   593 SDPYCGWDKDVNAC------RPYQLGLLQDVANETSGICDTSVLRKKVTS------SYGQTLHLS 645
            .||||.|...:.||      .....|.:||::.:||     |.|.|...|      .:|.|..|.
  Rat   516 RDPYCAWSPAIKACVTLHQAEGSSRGWIQDMSGDTS-----SCLDKSKESFHQHFFKHGGTAELK 575

  Fly   646 CFVK--MPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRYDSYLD-- 706
            ||.|  :..|:.|.|..           |::....||.......|::..:::||.|.|....:  
  Rat   576 CFQKSNLARVVWKFQNG-----------ELKAVSPKYGFVGRKHLLIFNLSDGDSGVYQCLSEER 629

  Fly   707 ------GTLLCSYGVTVDAHRCSPPSQKQDYQKIYSHWCNEFEKYKSAMKQ---------WQAKQ 756
                  ..||..:.:.|......|||...  |...:.......|...|..|         |....
  Rat   630 VRNKTVSQLLAKHILEVKMVARIPPSPTS--QTAQTEGSRITSKMPVASTQGSSPPTPALWATSP 692

  Fly   757 EQCGLKDKTGPISSNGKH------VNDVFSNDALVXPRKYLYSFEFLSSATEGVASAHRKLYIFV 815
            ....|..|:   ||.|..      :|.|        |:.:.....:|.|:...:..: ..|::||
  Rat   693 RAATLPPKS---SSTGTSCEPKMVINTV--------PQLHSEKTVYLKSSDNRLLMS-LLLFLFV 745

  Fly   816 FVLTIFA 822
            ..|.:|:
  Rat   746 LFLCLFS 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 161/488 (33%)
PSI 583..>606 CDD:396154 9/24 (38%)
Ig 632..724 CDD:472250 22/107 (21%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 1/3 (33%)
Ig strand E 686..690 CDD:409353 1/3 (33%)
Ig strand F 700..705 CDD:409353 1/4 (25%)
Ig strand G 717..720 CDD:409353 1/2 (50%)
Sema4dNP_001164034.1 Sema_4D 31..501 CDD:200520 166/529 (31%)
PSI 503..548 CDD:396154 15/45 (33%)
Ig 563..646 CDD:472250 19/93 (20%)
Ig strand B 572..576 CDD:409353 1/3 (33%)
Ig strand C 584..588 CDD:409353 1/3 (33%)
Ig strand E 607..611 CDD:409353 1/3 (33%)
Ig strand F 621..626 CDD:409353 1/4 (25%)
Ig strand G 639..642 CDD:409353 1/2 (50%)

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