DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema2b and sema3h

DIOPT Version :10

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001315307.1 Gene:sema3h / 30252 ZFINID:ZDB-GENE-990715-8 Length:749 Species:Danio rerio


Alignment Length:774 Identity:211/774 - (27%)
Similarity:315/774 - (40%) Gaps:141/774 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 RHHKEHVQDFSCGPL--------HYKTFYMDERNNALYVGAMDRIFRLNLRNISQSICERDVLIL 162
            |.|.:|.:....|.|        ...:...||....||:|..|.:...:|.:|:|:..:    |.
Zfish    24 RLHFQHSELMRSGRLVSLSMPAGDLNSLLPDEDGRRLYIGMKDHLLSTSLDDITQNPRK----IY 84

  Fly   163 EPTGSD-ILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDYVINANLTHLPRSQ 226
            .|...| |.:|...||..:::|.|.:||::  .:|...||.|||.|.||:...|..||......|
Zfish    85 WPANPDRIQDCTMAGKTLEMDCANFLRVLE--RYNQTHLYACGTGAFNPRCAFIPTNLFLRAEEQ 147

  Fly   227 YV--PGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGR 289
            .:  .....|.||||:|| ...||..:.:|.      ||||.:::|...|:...||        .
Zfish   148 TLQDEDTESGRGKCPFDP-HQRTATAIIDGE------LYAGISSDFLSHDTAFIRS--------L 197

  Fly   290 KEANFKRTVKYDSKLLDKPNFV-------GSFEIGEFVYFFFREHAVEYIN-CGKAVYSRVARVC 346
            .|.:..||.:|||..|....||       ...|..:.||.||.|.|.|... .||.:||||||||
Zfish   198 GERHVIRTEQYDSTWLQGAEFVHVTAMSESDNEEDDKVYVFFTERAQEAEGAAGKVLYSRVARVC 262

  Fly   347 KNDRGGKYMISQNWATYLKARMNCSISSE--FPFYFNEIQSVYKMPTDDTK---FYATFTTNTNG 406
            |||.||:..:...|:|:.|||:.||:...  ...:|:::|.::.....|.|   .|..|||.:|.
Zfish   263 KNDIGGQRSLVNKWSTFQKARIVCSVPGPDGIQTHFDKLQDIFIQHGRDKKNPLVYGLFTTTSNV 327

  Fly   407 LIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC-------HNDTATLPDS 464
            |.|||||.|.::||..||.|.|..: ..:...|.....:||.||||||       ...|...||.
Zfish   328 LNGSAVCVYRMQDIIRAFKGNFLHR-EGHQYKLTEYTGRVPYPRPGTCPSSTYGGFRSTREYPDD 391

  Fly   465 VLNFIRKHPLMDKAVDHEFGNPVFFKRDV--ILTKLVVDKIRIDKLNQEFLVYFVATTSGHIYKI 527
            |:.|.|.||||.:.|....|.|:..:..|  .||:|:||  |::.::.:..|.|:.|.||.:.|:
Zfish   392 VIFFSRTHPLMQEVVRPLGGQPLLIRVGVPYKLTRLLVD--RVEAVDGQHDVMFIGTDSGLVLKV 454

  Fly   528 VQFMHYGQRHSNL-VDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRC 591
            :.|....:::..: ::..:...|...|..||||.|...|:..:...|.|:.:..|.....:|..|
Zfish   455 LHFPKANRQNQEVTLEQLQVFKHKSAITAMTLSKKKQWLFAGSAEGVVQLGLFQCDLYGQACAEC 519

  Fly   592 --VSDPYCGWD-----------------------KDVNACRPYQLGLLQDVANETSGICDTSVLR 631
              ..||||.||                       ..:|.|.....| ||..|.|           
Zfish   520 CLARDPYCTWDGHSCSQFMPTGRRRNIRQVNDDGNPLNQCVRQGAG-LQVEAEE----------- 572

  Fly   632 KKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEG 696
            |.:..:.|.:.:|.|..|.    ......||....|....:.:.|..:.:...:.|:::......
Zfish   573 KTLVVAVGNSTYLECLPKS----HHATITWYKDIGENSLEQHKVTSGEQLVVIDRGILIPRAELN 633

  Fly   697 DGGRYDSYLD-----------------GTLLCSYGVT---------------VDAHRCSPPSQKQ 729
            ..|.|...|:                 ..|..|.|.|               ::.| |...||:.
Zfish   634 HAGVYHCQLEEHGFRWTAVTIRLTVWSPVLHPSLGATQPWYQDVMALINHSKLERH-CKELSQRH 697

  Fly   730 DYQKIYSHWCNEFEKYKSAMKQWQAKQEQCGLKDKTGPISSNGKHVNDVFSNDALVXPR 788
            :.::..:|..|     |...|:.:..:.:.|.|.:.|    .|:.......:.|.. ||
Zfish   698 NSRESVNHRAN-----KQDRKRTERHRHRGGEKKEKG----KGRKHRSRMQSSAQRLPR 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 159/492 (32%)
PSI 583..>606 CDD:396154 9/47 (19%)
Ig 632..724 CDD:472250 19/123 (15%)
Ig strand B 642..646 CDD:409353 1/3 (33%)
Ig strand C 658..662 CDD:409353 0/3 (0%)
Ig strand E 686..690 CDD:409353 1/3 (33%)
Ig strand F 700..705 CDD:409353 1/4 (25%)
Ig strand G 717..720 CDD:409353 0/2 (0%)
sema3hNP_001315307.1 Sema_3 39..509 CDD:200500 158/493 (32%)
PSI 508..>544 CDD:214655 9/35 (26%)
Ig_Sema3 569..661 CDD:409455 15/106 (14%)
Ig strand A 569..575 CDD:409455 3/16 (19%)
Ig strand B 580..588 CDD:409455 2/7 (29%)
Ig strand C 594..600 CDD:409455 1/5 (20%)
Ig strand C' 602..605 CDD:409455 0/2 (0%)
Ig strand D 616..620 CDD:409455 0/3 (0%)
Ig strand E 623..630 CDD:409455 1/6 (17%)
Ig strand F 636..645 CDD:409455 3/8 (38%)
Ig strand G 648..661 CDD:409455 0/12 (0%)

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