DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema2b and Sema4c

DIOPT Version :9

Sequence 1:NP_001261024.1 Gene:Sema2b / 246538 FlyBaseID:FBgn0264273 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_006244820.1 Gene:Sema4c / 301346 RGDID:1562837 Length:856 Species:Rattus norvegicus


Alignment Length:683 Identity:214/683 - (31%)
Similarity:313/683 - (45%) Gaps:103/683 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ENTWNLYYEPPCCTGSSAAHHLRHHKEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLR 148
            |..|||.......:|.......|..:..:|||       .|..:.:|:..|||||.:.:|..:: 
  Rat    44 EMWWNLAPRKTVSSGELVTVVRRFSQTGIQDF-------LTLTLTDRSGLLYVGAREALFAFSV- 100

  Fly   149 NISQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKLYVCGTNAHNPKDY 213
               :::..:.|:..|......:.|..|||..:.||.|.||.:||  :|...||||||.|..||..
  Rat   101 ---EALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQP--YNASHLYVCGTYAFQPKCT 160

  Fly   214 VINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYVENGNPFGLPALYAGTNAEFTKADSVIF 278
            .||.....|.|:::..    |.||||||||...|.:.|:.       .||:.|...|...:.||.
  Rat   161 YINMLTFTLDRAEFED----GKGKCPYDPAKGHTGLLVDG-------ELYSATLNNFLGTEPVIL 214

  Fly   279 RSDLYNLTNGRKEANFKRTVKYDSKLLDKPNFVGSF----EIGEF------VYFFFREHAVEYIN 333
            |:         ...:.....:|.:..|::|:||||.    .:|.|      :||||.|.||||..
  Rat   215 RN---------MGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDC 270

  Fly   334 CGKAVYSRVARVCKNDRGGKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKM---PTDDTK 395
            ..:.|.:|||||||.|.||...:.:.|.|:||||:.|| :.::..|||::::|:.:   ...:|.
  Rat   271 YSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCS-APDWKVYFNQLRAVHTLLGASWHNTT 334

  Fly   396 FYATFTTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRPGTC----HN 456
            |:|.|......:..||||.|.:..|...|:|.|||.:.....|.. ....||.||||:|    |.
  Rat   335 FFAVFQARWGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWAR-YTDPVPTPRPGSCINNWHR 398

  Fly   457 D-----TATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVDKI-RIDKLNQEFLVY 515
            |     :..|||:.||||:|||||::.|....|.|:..|::...|.:|.|:| .:|  ...:.|.
  Rat   399 DNGYTSSLELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLD--GATYTVL 461

  Fly   516 FVATTSGHIYKIVQ---FMHYGQRHSNLVDIFEASPHSEPIREMTLSHKTGSLYVATDHQVKQID 577
            |:.|..|.:.|.|.   ::|..:.    :.:|:    .||:..:.||.....|:..:..|:.|:.
  Rat   462 FIGTGDGWLLKAVSLGPWIHMVEE----LQVFD----QEPVESLVLSQSKKVLFAGSRSQLVQLS 518

  Fly   578 IAMCARRYDSCFRCV--SDPYCGWDKDVNACRPYQLG------LLQDVAN-ETSGIC-------D 626
            :|.|. :|..|..||  .||||.|  :||..|....|      |:|.||| :.|.:|       .
  Rat   519 LADCT-KYRFCVDCVLARDPYCAW--NVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKA 580

  Fly   627 TSVLRKKVTSSYGQTLHLSCFVKMPEVLRKKQTRWYHHSTEKGRYEVRYTPTKYI-DTNEGGLVL 690
            ..|:.|.:|...|..|.|.|.:..    ......|    |.:||......|..:: ||....||:
  Rat   581 RPVVPKNITVVAGTDLVLPCHLSS----NLAHALW----TFRGRDLPAEQPGSFLYDTGLQALVV 637

  Fly   691 LAVNEGDGGRYDSYLD--GTLLC--SYGVTVDA 719
            :|......|.|..|.:  ||.|.  ||.|:|.|
  Rat   638 MAAQSRHSGPYHCYSEEQGTKLAAESYLVSVVA 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema2bNP_001261024.1 Sema_2A 120..579 CDD:200499 155/484 (32%)
Ig 632..720 CDD:299845 27/93 (29%)
Sema4cXP_006244820.1 Sema_4C 64..520 CDD:200519 159/500 (32%)
PSI 521..>550 CDD:214655 13/31 (42%)
IG_like 585..659 CDD:214653 21/81 (26%)
Ig 586..670 CDD:299845 26/91 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.870

Return to query results.
Submit another query.